Literature DB >> 18629155

Antarctic genomics.

Melody S Clark1, Andrew Clarke, Charles S Cockell, Peter Convey, H William Detrich, Keiron P P Fraser, Ian A Johnston, Barbara A Methe, Alison E Murray, Lloyd S Peck, Karin Römisch, Alex D Rogers.   

Abstract

With the development of genomic science and its battery of technologies, polar biology stands on the threshold of a revolution, one that will enable the investigation of important questions of unprecedented scope and with extraordinary depth and precision. The exotic organisms of polar ecosystems are ideal candidates for genomic analysis. Through such analyses, it will be possible to learn not only the novel features that enable polar organisms to survive, and indeed thrive, in their extreme environments, but also fundamental biological principles that are common to most, if not all, organisms. This article aims to review recent developments in Antarctic genomics and to demonstrate the global context of such studies.

Year:  2004        PMID: 18629155      PMCID: PMC2447445          DOI: 10.1002/cfg.398

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  19 in total

1.  Evolution of an antifreeze glycoprotein.

Authors:  C H Cheng; L Chen
Journal:  Nature       Date:  1999-09-30       Impact factor: 49.962

2.  Remarkably low temperature optima for extracellular enzyme activity from Arctic bacteria and sea ice.

Authors:  A L Huston; B B Krieger-Brockett; J W Deming
Journal:  Environ Microbiol       Date:  2000-08       Impact factor: 5.491

3.  Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces.

Authors:  Oded Béjà; Eugene V Koonin; L Aravind; Lance T Taylor; Heidi Seitz; Jefferey L Stein; Daniel C Bensen; Robert A Feldman; Ronald V Swanson; Edward F DeLong
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

4.  Extreme responses to climate change in Antarctic lakes.

Authors:  Wendy C Quayle; Lloyd S Peck; Helen Peat; J C Ellis-Evans; P Richard Harrigan
Journal:  Science       Date:  2002-01-25       Impact factor: 47.728

5.  Ecology. Dammed experiments!

Authors:  J Diamond
Journal:  Science       Date:  2001-11-30       Impact factor: 47.728

6.  Effect of environmental factors on the synthesis of scytonemin, a UV-screening pigment, in a cyanobacterium (Chroococcidiopsis sp.).

Authors:  Jesse G Dillon; Cecelia M Tatsumi; Patrick G Tandingan; Richard W Castenholz
Journal:  Arch Microbiol       Date:  2002-01-31       Impact factor: 2.552

Review 7.  Climate variations and the physiological basis of temperature dependent biogeography: systemic to molecular hierarchy of thermal tolerance in animals.

Authors:  H O Pörtner
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2002-08       Impact factor: 2.320

8.  Concentrations of myoglobin and myoglobin mRNA in heart ventricles from Antarctic fishes.

Authors:  T J Moylan; B D Sidell
Journal:  J Exp Biol       Date:  2000-04       Impact factor: 3.312

9.  Heat-shock protein expression is absent in the antarctic fish Trematomus bernacchii (family Nototheniidae).

Authors:  G E Hofmann; B A Buckley; S Airaksinen; J E Keen; G N Somero
Journal:  J Exp Biol       Date:  2000-08       Impact factor: 3.312

10.  Temperature adaptation in Gillichthys (Teleost: Gobiidae) A(4)-lactate dehydrogenases: identical primary structures produce subtly different conformations.

Authors:  Peter A Fields; Yong-Sung Kim; John F Carpenter; George N Somero
Journal:  J Exp Biol       Date:  2002-05       Impact factor: 3.312

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  8 in total

1.  Antarctic ecology from genes to ecosystems: the impact of climate change and the importance of scale.

Authors:  Andrew Clarke; Nadine M Johnston; Eugene J Murphy; Alex D Rogers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-01-29       Impact factor: 6.237

2.  The biodiversity and ecology of Antarctic lakes: models for evolution.

Authors:  Johanna Laybourn-Parry; David A Pearce
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-12-29       Impact factor: 6.237

3.  Evolution and biodiversity of Antarctic organisms: a molecular perspective.

Authors:  Alex David Rogers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-12-29       Impact factor: 6.237

Review 4.  Marine pelagic ecosystems: the west Antarctic Peninsula.

Authors:  Hugh W Ducklow; Karen Baker; Douglas G Martinson; Langdon B Quetin; Robin M Ross; Raymond C Smith; Sharon E Stammerjohn; Maria Vernet; William Fraser
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-01-29       Impact factor: 6.237

5.  Microbial Consortium Associated with the Antarctic Marine Ciliate Euplotes focardii: An Investigation from Genomic Sequences.

Authors:  Sandra Pucciarelli; Raghul Rajan Devaraj; Alessio Mancini; Patrizia Ballarini; Michele Castelli; Martina Schrallhammer; Giulio Petroni; Cristina Miceli
Journal:  Microb Ecol       Date:  2015-02-24       Impact factor: 4.552

6.  Microbial life in a fjord: metagenomic analysis of a microbial mat in Chilean patagonia.

Authors:  Juan A Ugalde; Maria J Gallardo; Camila Belmar; Práxedes Muñoz; Nathaly Ruiz-Tagle; Sandra Ferrada-Fuentes; Carola Espinoza; Eric E Allen; Victor A Gallardo
Journal:  PLoS One       Date:  2013-08-28       Impact factor: 3.240

7.  Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus.

Authors:  J Auvinet; P Graça; L Belkadi; L Petit; E Bonnivard; A Dettaï; W H Detrich; C Ozouf-Costaz; D Higuet
Journal:  BMC Genomics       Date:  2018-05-09       Impact factor: 3.969

8.  Molecular cloning and expression of a cold-adapted lipase gene from an Antarctic deep sea psychrotrophic bacterium Pseudomonas sp. 7323.

Authors:  Jin-Wei Zhang; Run-Ying Zeng
Journal:  Mar Biotechnol (NY)       Date:  2008-05-07       Impact factor: 3.727

  8 in total

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