Literature DB >> 18629142

Workshop--Predicting the structure of biological molecules.

Damian Counsell1.   

Abstract

This April, in Cambridge (UK), principal investigators from the Mathematical Biology Group of the Medical Research Council's National Institute of Medical Research organized a workshop in structural bioinformatics at the Centre for Mathematical Sciences. Bioinformatics researchers of several nationalities from labs around the country presented and discussed their computational work in biomolecular structure prediction and analysis, and in protein evolution. The meeting was intensive and lively and gave attendees an overview of the healthy state of protein bioinformatics in the UK.

Year:  2004        PMID: 18629142      PMCID: PMC2447431          DOI: 10.1002/cfg.414

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  21 in total

1.  A 'periodic table' for protein structures.

Authors:  William R Taylor
Journal:  Nature       Date:  2002-04-11       Impact factor: 49.962

2.  Ab initio construction of polypeptide fragments: efficient generation of accurate, representative ensembles.

Authors:  Mark A DePristo; Paul I W de Bakker; Simon C Lovell; Tom L Blundell
Journal:  Proteins       Date:  2003-04-01

3.  From protein structure to biochemical function?

Authors:  Roman A Laskowski; James D Watson; Janet M Thornton
Journal:  J Struct Funct Genomics       Date:  2003

4.  Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins.

Authors:  Susan Jones; Hugh P Shanahan; Helen M Berman; Janet M Thornton
Journal:  Nucleic Acids Res       Date:  2003-12-15       Impact factor: 16.971

5.  Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome.

Authors:  Franca Fraternali; Luigi Cavallo
Journal:  Nucleic Acids Res       Date:  2002-07-01       Impact factor: 16.971

6.  Prediction of the structure and function of AstA and AstB, the first two enzymes of the arginine succinyltransferase pathway of arginine catabolism.

Authors:  Hiroki Shirai; Kenji Mizuguchi
Journal:  FEBS Lett       Date:  2003-12-18       Impact factor: 4.124

7.  HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database.

Authors:  Lucy A Stebbings; Kenji Mizuguchi
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

8.  The SUPERFAMILY database in 2004: additions and improvements.

Authors:  Martin Madera; Christine Vogel; Sarah K Kummerfeld; Cyrus Chothia; Julian Gough
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

9.  Testing homology with Contact Accepted mutatiOn (CAO): a contact-based Markov model of protein evolution.

Authors:  Kuang Lin; Jens Kleinjung; William R Taylor; Jaap Heringa
Journal:  Comput Biol Chem       Date:  2003-05       Impact factor: 2.877

10.  POPS: A fast algorithm for solvent accessible surface areas at atomic and residue level.

Authors:  Luigi Cavallo; Jens Kleinjung; Franca Fraternali
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

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