Literature DB >> 18629103

The Gene Ontology Annotation (GOA) Project--Application of GO in SWISS-PROT, TrEMBL and InterPro.

Evelyn Camon1, Daniel Barrell, Catherine Brooksbank, Michele Magrane, Rolf Apweiler.   

Abstract

Entities:  

Year:  2003        PMID: 18629103      PMCID: PMC2447390          DOI: 10.1002/cfg.235

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


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  6 in total

1.  Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.

Authors:  R Apweiler; M Biswas; W Fleischmann; A Kanapin; Y Karavidopoulou; P Kersey; E V Kriventseva; V Mittard; N Mulder; I Phan; E Zdobnov
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The Ensembl genome database project.

Authors:  T Hubbard; D Barker; E Birney; G Cameron; Y Chen; L Clark; T Cox; J Cuff; V Curwen; T Down; R Durbin; E Eyras; J Gilbert; M Hammond; L Huminiecki; A Kasprzyk; H Lehvaslaiho; P Lijnzaad; C Melsopp; E Mongin; R Pettett; M Pocock; S Potter; A Rust; E Schmidt; S Searle; G Slater; J Smith; W Spooner; A Stabenau; J Stalker; E Stupka; A Ureta-Vidal; I Vastrik; M Clamp
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

4.  Applications of InterPro in protein annotation and genome analysis.

Authors:  Margaret Biswas; John F O'Rourke; Evelyn Camon; Gill Fraser; Alexander Kanapin; Youla Karavidopoulou; Paul Kersey; Evgenia Kriventseva; Virginie Mittard; Nicola Mulder; Isabelle Phan; Florence Servant; Rolf Apweiler
Journal:  Brief Bioinform       Date:  2002-09       Impact factor: 11.622

5.  NIH pledges cash for global protein database.

Authors:  Declan Butler
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

6.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

  6 in total
  19 in total

1.  The European Bioinformatics Institute's data resources.

Authors:  Catherine Brooksbank; Evelyn Camon; Midori A Harris; Michele Magrane; Maria Jesus Martin; Nicola Mulder; Claire O'Donovan; Helen Parkinson; Mary Ann Tuli; Rolf Apweiler; Ewan Birney; Alvis Brazma; Kim Henrick; Rodrigo Lopez; Guenter Stoesser; Peter Stoehr; Graham Cameron
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  Covalent DNA-Protein Cross-Linking by Phosphoramide Mustard and Nornitrogen Mustard in Human Cells.

Authors:  Arnold Groehler; Peter W Villalta; Colin Campbell; Natalia Tretyakova
Journal:  Chem Res Toxicol       Date:  2016-01-20       Impact factor: 3.739

3.  Transcriptional impact of organophosphate and metal mixtures on olfaction: copper dominates the chlorpyrifos-induced response in adult zebrafish.

Authors:  Fred A Tilton; Susan C Tilton; Theo K Bammler; Richard P Beyer; Patricia L Stapleton; Nathaniel L Scholz; Evan P Gallagher
Journal:  Aquat Toxicol       Date:  2011-02-02       Impact factor: 4.964

4.  INTEGRATING COMPUTATIONAL PROTEIN FUNCTION PREDICTION INTO DRUG DISCOVERY INITIATIVES.

Authors:  Marianne A Grant
Journal:  Drug Dev Res       Date:  2011-02       Impact factor: 4.360

5.  The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Authors:  Evelyn Camon; Michele Magrane; Daniel Barrell; Vivian Lee; Emily Dimmer; John Maslen; David Binns; Nicola Harte; Rodrigo Lopez; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

6.  Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development.

Authors:  Jennifer I Deegan née Clark; Emily C Dimmer; Christopher J Mungall
Journal:  BMC Bioinformatics       Date:  2010-10-25       Impact factor: 3.169

7.  Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation.

Authors:  Sarah Burge; Elizabeth Kelly; David Lonsdale; Prudence Mutowo-Muellenet; Craig McAnulla; Alex Mitchell; Amaia Sangrador-Vegas; Siew-Yit Yong; Nicola Mulder; Sarah Hunter
Journal:  Database (Oxford)       Date:  2012-02-01       Impact factor: 3.451

8.  Mining the Gene Wiki for functional genomic knowledge.

Authors:  Benjamin M Good; Douglas G Howe; Simon M Lin; Warren A Kibbe; Andrew I Su
Journal:  BMC Genomics       Date:  2011-12-13       Impact factor: 3.969

9.  SNAD: Sequence Name Annotation-based Designer.

Authors:  Igor A Sidorov; Denis A Reshetov; Alexander E Gorbalenya
Journal:  BMC Bioinformatics       Date:  2009-08-14       Impact factor: 3.169

10.  Computational biology methods and their application to the comparative genomics of endocellular symbiotic bacteria of insects.

Authors:  Jennifer Commins; Christina Toft; Mario A Fares
Journal:  Biol Proced Online       Date:  2009-03-11       Impact factor: 3.244

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