Literature DB >> 18629077

Multiple sequence alignments as tools for protein structure and function prediction.

Alfonso Valencia1.   

Abstract

Multiple sequence alignments have much to offer to the understanding of protein structure, evolution and function. We are developing approaches to use this information in predicting protein-binding specificity, intra-protein and protein-protein interactions, and in reconstructing protein interaction networks.

Year:  2003        PMID： 18629077      PMCID： PMC2447362          DOI： 10.1002/cfg.313

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN： 1531-6912


  20 in total

1.  Protein interaction maps for complete genomes based on gene fusion events.

Authors:  A J Enright; I Iliopoulos; N C Kyrpides; C A Ouzounis
Journal:  Nature       Date:  1999-11-04       Impact factor: 49.962

2.  Effective use of sequence correlation and conservation in fold recognition.

Authors:  O Olmea; B Rost; A Valencia
Journal:  J Mol Biol       Date:  1999-11-12       Impact factor: 5.469

3.  The use of gene clusters to infer functional coupling.

Authors:  R Overbeek; M Fonstein; M D'Souza; G D Pusch; N Maltsev
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

4.  Similarity of phylogenetic trees as indicator of protein-protein interaction.

Authors:  F Pazos; A Valencia
Journal:  Protein Eng       Date:  2001-09

5.  Probabilistic prediction of unknown metabolic and signal-transduction networks.

Authors:  S M Gomez; S H Lo; A Rzhetsky
Journal:  Genetics       Date:  2001-11       Impact factor: 4.562

6.  Prediction of contact maps with neural networks and correlated mutations.

Authors:  P Fariselli; O Olmea; A Valencia; R Casadio
Journal:  Protein Eng       Date:  2001-11

7.  Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations.

Authors:  P Fariselli; O Olmea; A Valencia; R Casadio
Journal:  Proteins       Date:  2001

8.  A combined algorithm for genome-wide prediction of protein function.

Authors:  E M Marcotte; M Pellegrini; M J Thompson; T O Yeates; D Eisenberg
Journal:  Nature       Date:  1999-11-04       Impact factor: 49.962

9.  The protein-protein interaction map of Helicobacter pylori.

Authors:  J C Rain; L Selig; H De Reuse; V Battaglia; C Reverdy; S Simon; G Lenzen; F Petel; J Wojcik; V Schächter; Y Chemama; A Labigne; P Legrain
Journal:  Nature       Date:  2001-01-11       Impact factor: 49.962

10.  Correlated sequence-signatures as markers of protein-protein interaction.

Authors:  E Sprinzak; H Margalit
Journal:  J Mol Biol       Date:  2001-08-24       Impact factor: 5.469
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  1 in total

1.  FireProt: web server for automated design of thermostable proteins.

Authors:  Milos Musil; Jan Stourac; Jaroslav Bendl; Jan Brezovsky; Zbynek Prokop; Jaroslav Zendulka; Tomas Martinek; David Bednar; Jiri Damborsky
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971
  1 in total

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