Literature DB >> 18629039

Enabling proteomics: the need for an extendable 'workbench' for user-configurable solutions.

Robert J Beynon1.   

Abstract

Proteomics has the capability to generate overwhelming quantities of data in relatively short timescales, and it is not uncommon to see experimenters investing substantially more time in data analysis than in data gathering. Although several sophisticated tools for data reduction and analysis are available, they lack the flexibility to cope with increasingly innovative experimental strategies and new database resources that encode both qualitative and quantitative data. I will outline a specification of a flexible proteomics tool that could address many current bottlenecks and deficiencies.

Year:  2004        PMID: 18629039      PMCID: PMC2447322          DOI: 10.1002/cfg.372

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  4 in total

1.  The proteomics standards initiative.

Authors:  Sandra Orchard; Henning Hermjakob; Rolf Apweiler
Journal:  Proteomics       Date:  2003-07       Impact factor: 3.984

2.  A systematic approach to modeling, capturing, and disseminating proteomics experimental data.

Authors:  Chris F Taylor; Norman W Paton; Kevin L Garwood; Paul D Kirby; David A Stead; Zhikang Yin; Eric W Deutsch; Laura Selway; Janet Walker; Isabel Riba-Garcia; Shabaz Mohammed; Michael J Deery; Julie A Howard; Tom Dunkley; Ruedi Aebersold; Douglas B Kell; Kathryn S Lilley; Peter Roepstorff; John R Yates; Andy Brass; Alistair J P Brown; Phil Cash; Simon J Gaskell; Simon J Hubbard; Stephen G Oliver
Journal:  Nat Biotechnol       Date:  2003-03       Impact factor: 54.908

3.  Progress in Establishing Common Standards for Exchanging Proteomics Data: The Second Meeting of the HUPO Proteomics Standards Initiative.

Authors:  Sandra Orchard; Paul Kersey; Weimin Zhu; Luisa Montecchi-Palazzi; Henning Hermjakob; Rolf Apweiler
Journal:  Comp Funct Genomics       Date:  2003

4.  Stable isotope labelling in vivo as an aid to protein identification in peptide mass fingerprinting.

Authors:  Julie M Pratt; Duncan H L Robertson; Simon J Gaskell; Isabel Riba-Garcia; Simon J Hubbard; Khushwant Sidhu; Stephen G Oliver; Philip Butler; Andrew Hayes; June Petty; Robert J Beynon
Journal:  Proteomics       Date:  2002-02       Impact factor: 3.984

  4 in total

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