Literature DB >> 18628892

MaizeDB - a functional genomics perspective.

Mary Polacco1, Ed Coe, Zhiwei Fang, Denis Hancock, Hector Sanchez-Villeda, Steve Schroeder.   

Abstract

MaizeDB (http://www.agron.missouri.edu/) has existed since the early 90's as a genomespecific database that is grounded in genetic maps, their documentation and annotation. The database management system is robust and has continuously been Sybase. In this brief review we provide an introduction to the database as a functional genomics tool and new accesses to the data: 1) probe tables by bin location 2) BLAST access to map data 3) cMap, a comparative map graphical tool.

Entities:  

Year:  2002        PMID: 18628892      PMCID: PMC2447252          DOI: 10.1002/cfg.157

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  2 in total

1.  MaizeGDB update: new tools, data and interface for the maize model organism database.

Authors:  Carson M Andorf; Ethalinda K Cannon; John L Portwood; Jack M Gardiner; Lisa C Harper; Mary L Schaeffer; Bremen L Braun; Darwin A Campbell; Abhinav G Vinnakota; Venktanaga V Sribalusu; Miranda Huerta; Kyoung Tak Cho; Kokulapalan Wimalanathan; Jacqueline D Richter; Emily D Mauch; Bhavani S Rao; Scott M Birkett; Taner Z Sen; Carolyn J Lawrence-Dill
Journal:  Nucleic Acids Res       Date:  2015-10-01       Impact factor: 16.971

2.  MaizeGDB 2018: the maize multi-genome genetics and genomics database.

Authors:  John L Portwood; Margaret R Woodhouse; Ethalinda K Cannon; Jack M Gardiner; Lisa C Harper; Mary L Schaeffer; Jesse R Walsh; Taner Z Sen; Kyoung Tak Cho; David A Schott; Bremen L Braun; Miranda Dietze; Brittney Dunfee; Christine G Elsik; Nancy Manchanda; Ed Coe; Marty Sachs; Philip Stinard; Josh Tolbert; Shane Zimmerman; Carson M Andorf
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

  2 in total

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