Literature DB >> 18628858

Website review: how to get the best from fission yeast genome data.

Valerie Wood1, Jürg Bähler.   

Abstract

Researchers are increasingly depending on various centralized resources to access the vast amount of information reported in the literature and generated by systematic sequencing and functional genomics projects. Biological databases have become everyday working tools for many researchers. This dependency goes both ways in that the databases require continuous feedback from the research community to maintain accurate, reliable, and upto- date information. The fission yeast Schizosaccharomyces pombe has recently been sequenced, setting the stage for the post-genome era of this popular model organism. Here, we provide an overview of relevant databases available, or being developed, together with a compilation of Internet resources containing useful information and tools for fission yeast.

Entities:  

Year:  2002        PMID: 18628858      PMCID: PMC2447279          DOI: 10.1002/cfg.175

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  13 in total

1.  The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Authors:  R Apweiler; T K Attwood; A Bairoch; A Bateman; E Birney; M Biswas; P Bucher; L Cerutti; F Corpet; M D Croning; R Durbin; L Falquet; W Fleischmann; J Gouzy; H Hermjakob; N Hulo; I Jonassen; D Kahn; A Kanapin; Y Karavidopoulou; R Lopez; B Marx; N J Mulder; T M Oinn; M Pagni; F Servant; C J Sigrist; E M Zdobnov
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

3.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

4.  yMGV: helping biologists with yeast microarray data mining.

Authors:  Stéphane Le Crom; Frédéric Devaux; Claude Jacq; Philippe Marc
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  Brouhaha over the other yeast.

Authors:  Jonathan A Eisen
Journal:  Nature       Date:  2002-02-21       Impact factor: 49.962

6.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

7.  The genome sequence of Schizosaccharomyces pombe.

Authors:  V Wood; R Gwilliam; M-A Rajandream; M Lyne; R Lyne; A Stewart; J Sgouros; N Peat; J Hayles; S Baker; D Basham; S Bowman; K Brooks; D Brown; S Brown; T Chillingworth; C Churcher; M Collins; R Connor; A Cronin; P Davis; T Feltwell; A Fraser; S Gentles; A Goble; N Hamlin; D Harris; J Hidalgo; G Hodgson; S Holroyd; T Hornsby; S Howarth; E J Huckle; S Hunt; K Jagels; K James; L Jones; M Jones; S Leather; S McDonald; J McLean; P Mooney; S Moule; K Mungall; L Murphy; D Niblett; C Odell; K Oliver; S O'Neil; D Pearson; M A Quail; E Rabbinowitsch; K Rutherford; S Rutter; D Saunders; K Seeger; S Sharp; J Skelton; M Simmonds; R Squares; S Squares; K Stevens; K Taylor; R G Taylor; A Tivey; S Walsh; T Warren; S Whitehead; J Woodward; G Volckaert; R Aert; J Robben; B Grymonprez; I Weltjens; E Vanstreels; M Rieger; M Schäfer; S Müller-Auer; C Gabel; M Fuchs; A Düsterhöft; C Fritzc; E Holzer; D Moestl; H Hilbert; K Borzym; I Langer; A Beck; H Lehrach; R Reinhardt; T M Pohl; P Eger; W Zimmermann; H Wedler; R Wambutt; B Purnelle; A Goffeau; E Cadieu; S Dréano; S Gloux; V Lelaure; S Mottier; F Galibert; S J Aves; Z Xiang; C Hunt; K Moore; S M Hurst; M Lucas; M Rochet; C Gaillardin; V A Tallada; A Garzon; G Thode; R R Daga; L Cruzado; J Jimenez; M Sánchez; F del Rey; J Benito; A Domínguez; J L Revuelta; S Moreno; J Armstrong; S L Forsburg; L Cerutti; T Lowe; W R McCombie; I Paulsen; J Potashkin; G V Shpakovski; D Ussery; B G Barrell; P Nurse; L Cerrutti
Journal:  Nature       Date:  2002-02-21       Impact factor: 49.962

8.  Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.

Authors:  C A Ball; H Jin; G Sherlock; S Weng; J C Matese; R Andrada; G Binkley; K Dolinski; S S Dwight; M A Harris; L Issel-Tarver; M Schroeder; D Botstein; J M Cherry
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

9.  The Pfam protein families database.

Authors:  Alex Bateman; Ewan Birney; Lorenzo Cerruti; Richard Durbin; Laurence Etwiller; Sean R Eddy; Sam Griffiths-Jones; Kevin L Howe; Mhairi Marshall; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

10.  Featured organism: Schizosaccharomyces pombe, the fission yeast.

Authors:  Jo Wixon
Journal:  Comp Funct Genomics       Date:  2002
View more
  3 in total

1.  yMGV: a cross-species expression data mining tool.

Authors:  Gaëlle Lelandais; Stéphane Le Crom; Frédéric Devaux; Stéphane Vialette; George M Church; Claude Jacq; Philippe Marc
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Correlations between gene expression and gene conservation in fission yeast.

Authors:  Juan Mata; Jürg Bahler
Journal:  Genome Res       Date:  2003-11-12       Impact factor: 9.043

3.  Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data.

Authors:  Rachel Lyne; Gavin Burns; Juan Mata; Chris J Penkett; Gabriella Rustici; Dongrong Chen; Cordelia Langford; David Vetrie; Jürg Bähler
Journal:  BMC Genomics       Date:  2003-07-10       Impact factor: 3.969

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.