Literature DB >> 18615419

Quantum chemistry in parallel with PQS.

Jon Baker1, Krzystof Wolinski, Massimo Malagoli, Don Kinghorn, Pawel Wolinski, Gábor Magyarfalvi, Svein Saebo, Tomasz Janowski, Peter Pulay.   

Abstract

This article describes the capabilities and performance of the latest release (version 4.0) of the Parallel Quantum Solutions (PQS) ab initio program package. The program was first released in 1998 and evolved from the TEXAS program package developed by Pulay and coworkers in the late 1970s. PQS was designed from the start to run on Linux-based clusters (which at the time were just becoming popular) with all major functionality being (a) fully parallel; and (b) capable of carrying out calculations on large-by ab initio standards-molecules, our initial aim being at least 100 atoms and 1000 basis functions with only modest memory requirements. With modern hardware and recent algorithmic developments, full accuracy, high-level calculations (DFT, MP2, CI, and Coupled-Cluster) can be performed on systems with up to several thousand basis functions on small (4-32 node) Linux clusters. We have also developed a graphical user interface with a model builder, job input preparation, parallel job submission, and post-job visualization and display.

Entities:  

Year:  2009        PMID: 18615419     DOI: 10.1002/jcc.21052

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  12 in total

1.  The hydrogen catalyst cobaloxime: a multifrequency EPR and DFT study of cobaloxime's electronic structure.

Authors:  Jens Niklas; Kristy L Mardis; Rakhim R Rakhimov; Karen L Mulfort; David M Tiede; Oleg G Poluektov
Journal:  J Phys Chem B       Date:  2012-02-29       Impact factor: 2.991

2.  Instability of 2,2-di(pyridin-2-yl)acetic acid. Tautomerization versus decarboxylation.

Authors:  Piotr Borowski; Ryszard Gawinecki; Anna Miłaczewska; Agnieszka Skotnicka; Krzysztof Woliński; Agnieszka Brzyska
Journal:  J Mol Model       Date:  2010-07-01       Impact factor: 1.810

3.  The NSAID allosteric site of human cytosolic sulfotransferases.

Authors:  Ting Wang; Ian Cook; Thomas S Leyh
Journal:  J Biol Chem       Date:  2017-10-16       Impact factor: 5.157

4.  Allosteres to regulate neurotransmitter sulfonation.

Authors:  Kristie Darrah; Ting Wang; Ian Cook; Mary Cacace; Alexander Deiters; Thomas S Leyh
Journal:  J Biol Chem       Date:  2018-12-13       Impact factor: 5.157

5.  X-ray Crystallographic, Multifrequency Electron Paramagnetic Resonance, and Density Functional Theory Characterization of the Ni(P(Cy)2N(tBu)2)2(n+) Hydrogen Oxidation Catalyst in the Ni(I) Oxidation State.

Authors:  Jens Niklas; Mark Westwood; Kristy L Mardis; Tiara L Brown; Anthony M Pitts-McCoy; Michael D Hopkins; Oleg G Poluektov
Journal:  Inorg Chem       Date:  2015-06-22       Impact factor: 5.165

6.  Highly-efficient charge separation and polaron delocalization in polymer-fullerene bulk-heterojunctions: a comparative multi-frequency EPR and DFT study.

Authors:  Jens Niklas; Kristy L Mardis; Brian P Banks; Gregory M Grooms; Andreas Sperlich; Vladimir Dyakonov; Serge Beaupré; Mario Leclerc; Tao Xu; Luping Yu; Oleg G Poluektov
Journal:  Phys Chem Chem Phys       Date:  2013-05-14       Impact factor: 3.676

7.  A benchmark comparison of σ/σ and π/π dispersion: the dimers of naphthalene and decalin, and coronene and perhydrocoronene.

Authors:  Tomasz Janowski; Peter Pulay
Journal:  J Am Chem Soc       Date:  2012-10-09       Impact factor: 15.419

8.  Electronic Structure of Fullerene Acceptors in Organic Bulk-Heterojunctions: A Combined EPR and DFT Study.

Authors:  Kristy L Mardis; Jeremy N Webb; Tarita Holloway; Jens Niklas; Oleg G Poluektov
Journal:  J Phys Chem Lett       Date:  2015-11-16       Impact factor: 6.475

9.  Huntingtin exon 1 fibrils feature an interdigitated β-hairpin-based polyglutamine core.

Authors:  Cody L Hoop; Hsiang-Kai Lin; Karunakar Kar; Gábor Magyarfalvi; Jonathan M Lamley; Jennifer C Boatz; Abhishek Mandal; Józef R Lewandowski; Ronald Wetzel; Patrick C A van der Wel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

10.  Polaron and Exciton Delocalization in Oligomers of High-Performance Polymer PTB7.

Authors:  Jens Niklas; Tianyue Zheng; Andriy Neshchadin; Kristy L Mardis; Luping Yu; Oleg G Poluektov
Journal:  J Am Chem Soc       Date:  2020-01-07       Impact factor: 15.419

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