Literature DB >> 18614866

Identification of novel markers for liver fibrosis in HIV/hepatitis C virus coinfected individuals using genomics-based approach.

Daniel L Suzman1, Mary McLaughlin, Zonghui Hu, David E Kleiner, Brad Wood, Richard A Lempicki, Joann M Mican, Anthony Suffredini, Henry Masur, Michael A Polis, Shyam Kottilil.   

Abstract

OBJECTIVE: The degree of liver fibrosis is a determinant for initiation of therapy for hepatitis C virus. Liver biopsy is invasive, risky and costly, but is required to assess fibrosis. This study intended to identify novel noninvasive markers to accurately assess fibrosis in HIV/hepatitis C virus coinfection.
METHODS: Using 100 biopsies from 68 HIV/hepatitis C virus coinfected patients, we developed a predictive model consisting of six serum markers along with age and antiretroviral therapy experience. DNA microarray analysis of peripheral blood mononuclear cells associated with a subset of 51 biopsies obtained from 28 patients was performed and incorporated into a second model.
RESULTS: The eight-marker model yielded an area under the receiver operating characteristic curve of 0.904. Combined analysis of clinical and DNA microarray data in the 51-biopsy subset identified two genes (alanine amino peptidase-N and mitogen-activated protein kinase kinase-3) that predicted fibrosis with high significance. The four-marker model that included the two genes and two serum markers had an area under the receiver operating characteristic curve of 0.852, which did not differ significantly from the eight-marker model on this subset (area under the receiver operating characteristic curve = 0.856, P = 0.96).
CONCLUSION: Both models accurately predicted fibrosis with an accuracy of 87.9%, thereby sparing 83% of patients from obtaining a biopsy. DNA microarray analysis can be invaluable in identifying novel biomarkers of liver fibrosis.

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Year:  2008        PMID: 18614866      PMCID: PMC2654216          DOI: 10.1097/QAD.0b013e328304dfe7

Source DB:  PubMed          Journal:  AIDS        ISSN: 0269-9370            Impact factor:   4.177


  26 in total

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Authors:  Vincent Soriano; Mark Sulkowski; Colm Bergin; Angelos Hatzakis; Patrice Cacoub; Christine Katlama; Antonietta Cargnel; Stefan Mauss; Douglas Dieterich; Santiago Moreno; Carlo Ferrari; Thierry Poynard; Jürgen Rockstroh
Journal:  AIDS       Date:  2002-04-12       Impact factor: 4.177

2.  CD13/aminopeptidase N, a novel chemoattractant for T lymphocytes in pulmonary sarcoidosis.

Authors:  K Tani; F Ogushi; L Huang; T Kawano; H Tada; N Hariguchi; S Sone
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3.  Longitudinal data analysis for discrete and continuous outcomes.

Authors:  S L Zeger; K Y Liang
Journal:  Biometrics       Date:  1986-03       Impact factor: 2.571

4.  Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach.

Authors:  E R DeLong; D M DeLong; D L Clarke-Pearson
Journal:  Biometrics       Date:  1988-09       Impact factor: 2.571

5.  Expression of aminopeptidase N in bile canaliculi: a predictor of clinical outcome in biliary atresia and a potential tool to implicate the mechanism of biliary atresia.

Authors:  C Liu; J H Chiu; T Chin; L S Wang; C H Tai; A F Li; C Wei
Journal:  J Surg Res       Date:  2001-09       Impact factor: 2.192

6.  FR-167653, a selective p38 MAPK inhibitor, exerts salutary effect on liver cirrhosis through downregulation of Runx2.

Authors:  Shinji Hattori; Dipok K Dhar; Nobumasa Hara; Yasuhito Tonomoto; Toshinao Onoda; Takashi Ono; Akira Yamanoi; Mitsuo Tachibana; Mikako Tsuchiya; Naofumi Nagasue
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7.  Human myeloid plasma membrane glycoprotein CD13 (gp150) is identical to aminopeptidase N.

Authors:  A T Look; R A Ashmun; L H Shapiro; S C Peiper
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8.  Effect of antiretroviral drugs on liver fibrosis in HIV-infected patients with chronic hepatitis C: harmful impact of nevirapine.

Authors:  Juan Macías; Victor Castellano; Nicolás Merchante; Rosa B Palacios; José A Mira; Carmen Sáez; José A García-García; Fernando Lozano; Jesús M Gómez-Mateos; Juan A Pineda
Journal:  AIDS       Date:  2004-03-26       Impact factor: 4.177

9.  Transforming growth factor-beta1 stimulates vascular endothelial growth factor 164 via mitogen-activated protein kinase kinase 3-p38alpha and p38delta mitogen-activated protein kinase-dependent pathway in murine mesangial cells.

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Journal:  J Biol Chem       Date:  2004-05-13       Impact factor: 5.157

10.  Intraobserver and interobserver variations in liver biopsy interpretation in patients with chronic hepatitis C. The French METAVIR Cooperative Study Group.

Authors: 
Journal:  Hepatology       Date:  1994-07       Impact factor: 17.425

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1.  Investigation of plasma biomarkers in HIV-1/HCV mono- and coinfected individuals by multiplex iTRAQ quantitative proteomics.

Authors:  Vivekananda Shetty; Pooja Jain; Zacharie Nickens; Gomathinayagam Sinnathamby; Anand Mehta; Ramila Philip
Journal:  OMICS       Date:  2011-10

Review 2.  HIV/HCV co-infection: pathogenesis, clinical complications, treatment, and new therapeutic technologies.

Authors:  Eva A Operskalski; Andrea Kovacs
Journal:  Curr HIV/AIDS Rep       Date:  2011-03       Impact factor: 5.071

3.  Genomics and proteomics in liver fibrosis and cirrhosis.

Authors:  Rebekka A Hannivoort; Virginia Hernandez-Gea; Scott L Friedman
Journal:  Fibrogenesis Tissue Repair       Date:  2012-01-03

Review 4.  Immuno-pathomechanism of liver fibrosis: targeting chemokine CCL2-mediated HIV:HCV nexus.

Authors:  A W Wahid Ansari; Reinhold E Schmidt; Esaki M Shankar; Adeeba Kamarulzaman
Journal:  J Transl Med       Date:  2014-12-10       Impact factor: 5.531

5.  Unique and differential protein signatures within the mononuclear cells of HIV-1 and HCV mono-infected and co-infected patients.

Authors:  Nawal M Boukli; Vivekananda Shetty; Luis Cubano; Martha Ricaurte; Jordana Coelho-Dos-Reis; Zacharie Nickens; Punit Shah; Andrew H Talal; Ramila Philip; Pooja Jain
Journal:  Clin Proteomics       Date:  2012-09-07       Impact factor: 3.988

  5 in total

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