Literature DB >> 18611856

Evidence that two enzyme-derived histidine ligands are sufficient for iron binding and catalysis by factor inhibiting HIF (FIH).

Kirsty S Hewitson1, Samantha L Holmes, Dominic Ehrismann, Adam P Hardy, Rasheduzzaman Chowdhury, Christopher J Schofield, Michael A McDonough.   

Abstract

A 2-His-1-carboxylate triad of iron binding residues is present in many non-heme iron oxygenases including the Fe(II) and 2-oxoglutarate (2OG)-dependent dioxygenases. Three variants (D201A, D201E, and D201G) of the iron binding Asp-201 residue of an asparaginyl hydroxylase, factor inhibiting HIF (FIH), were made and analyzed. FIH-D201A and FIH-D201E did not catalyze asparaginyl hydroxylation, but in the presence of a reducing agent, they displayed enhanced 2OG turnover when compared with wild-type FIH. Turnover of 2OG by FIH-D201A was significantly stimulated by the addition of HIF-1alpha(786-826) peptide. Like FIH-D201A and D201E, the D201G variant enhanced 2OG turnover but rather unexpectedly catalyzed asparaginyl hydroxylation. Crystal structures of the FIH-D201A and D201G variants in complex with Fe(II)/Zn(II), 2OG, and HIF-1alpha(786-826/788-806) implied that only two FIH-based residues (His-199 and His-279) are required for metal binding. The results indicate that variation of 2OG-dependent dioxygenase iron-ligating residues as a means of functional assignment should be treated with caution. The results are of mechanistic interest in the light of recent biochemical and structural analyses of non-heme iron and 2OG-dependent halogenases that are similar to the FIH-D201A/G variants in that they use only two His-residues to ligate iron.

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Year:  2008        PMID: 18611856      PMCID: PMC3258853          DOI: 10.1074/jbc.M804999200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  38 in total

1.  Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase.

Authors:  Z Zhang; J Ren; D K Stammers; J E Baldwin; K Harlos; C J Schofield
Journal:  Nat Struct Biol       Date:  2000-02

2.  Mutational evidence supporting the involvement of tripartite residues His183, Asp185, and His243 in Streptomyces clavuligerus deacetoxycephalosporin C synthase for catalysis.

Authors:  J Sim; T S Sim
Journal:  Biosci Biotechnol Biochem       Date:  2000-04       Impact factor: 2.043

3.  Structure of human FIH-1 reveals a unique active site pocket and interaction sites for HIF-1 and von Hippel-Lindau.

Authors:  Cheolju Lee; Seung Jun Kim; Dae Gwin Jeong; Soon Mi Lee; Seong Eon Ryu
Journal:  J Biol Chem       Date:  2002-12-12       Impact factor: 5.157

4.  Asparagine hydroxylation of the HIF transactivation domain a hypoxic switch.

Authors:  David Lando; Daniel J Peet; Dean A Whelan; Jeffrey J Gorman; Murray L Whitelaw
Journal:  Science       Date:  2002-02-01       Impact factor: 47.728

5.  A conserved family of prolyl-4-hydroxylases that modify HIF.

Authors:  R K Bruick; S L McKnight
Journal:  Science       Date:  2001-10-11       Impact factor: 47.728

6.  C. elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation.

Authors:  A C Epstein; J M Gleadle; L A McNeill; K S Hewitson; J O'Rourke; D R Mole; M Mukherji; E Metzen; M I Wilson; A Dhanda; Y M Tian; N Masson; D L Hamilton; P Jaakkola; R Barstead; J Hodgkin; P H Maxwell; C W Pugh; C J Schofield; P J Ratcliffe
Journal:  Cell       Date:  2001-10-05       Impact factor: 41.582

7.  Structure of factor-inhibiting hypoxia-inducible factor 1: An asparaginyl hydroxylase involved in the hypoxic response pathway.

Authors:  Charles E Dann; Richard K Bruick; Johann Deisenhofer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-13       Impact factor: 11.205

8.  Hypoxia-inducible factor (HIF) asparagine hydroxylase is identical to factor inhibiting HIF (FIH) and is related to the cupin structural family.

Authors:  Kirsty S Hewitson; Luke A McNeill; Madeline V Riordan; Ya-Min Tian; Alex N Bullock; Richard W Welford; Jonathan M Elkins; Neil J Oldham; Shoumo Bhattacharya; Jonathan M Gleadle; Peter J Ratcliffe; Christopher W Pugh; Christopher J Schofield
Journal:  J Biol Chem       Date:  2002-05-31       Impact factor: 5.157

9.  Structure of factor-inhibiting hypoxia-inducible factor (HIF) reveals mechanism of oxidative modification of HIF-1 alpha.

Authors:  Jonathan M Elkins; Kirsty S Hewitson; Luke A McNeill; Jurgen F Seibel; Imre Schlemminger; Christopher W Pugh; Peter J Ratcliffe; Christopher J Schofield
Journal:  J Biol Chem       Date:  2002-11-21       Impact factor: 5.157

10.  FIH-1 is an asparaginyl hydroxylase enzyme that regulates the transcriptional activity of hypoxia-inducible factor.

Authors:  David Lando; Daniel J Peet; Jeffrey J Gorman; Dean A Whelan; Murray L Whitelaw; Richard K Bruick
Journal:  Genes Dev       Date:  2002-06-15       Impact factor: 11.361

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  22 in total

1.  Prevention of apoptosis by the interaction between FIH1 and Bax.

Authors:  Biao Yan; Men Kong; Yi-han Chen
Journal:  Mol Cell Biochem       Date:  2010-11-11       Impact factor: 3.396

2.  Development of homogeneous luminescence assays for histone demethylase catalysis and binding.

Authors:  Akane Kawamura; Anthony Tumber; Nathan R Rose; Oliver N F King; Michelle Daniel; Udo Oppermann; Tom D Heightman; Christopher Schofield
Journal:  Anal Biochem       Date:  2010-05-21       Impact factor: 3.365

3.  Substrate Promotes Productive Gas Binding in the α-Ketoglutarate-Dependent Oxygenase FIH.

Authors:  Cornelius Y Taabazuing; Justin Fermann; Scott Garman; Michael J Knapp
Journal:  Biochemistry       Date:  2016-01-05       Impact factor: 3.162

4.  Assembly of a mononuclear ferrous site using a bulky aldehyde-imidazole ligand.

Authors:  Jia Li; Monika A Molenda; Shannon M Biros; Richard J Staples; Ferman A Chavez
Journal:  Inorganica Chim Acta       Date:  2017-05-13       Impact factor: 2.545

5.  The facial triad in the α-ketoglutarate dependent oxygenase FIH: A role for sterics in linking substrate binding to O2 activation.

Authors:  John A Hangasky; Cornelius Y Taabazuing; Cristina B Martin; Scott J Eron; Michael J Knapp
Journal:  J Inorg Biochem       Date:  2016-10-17       Impact factor: 4.155

6.  O2 Activation by Nonheme FeII α-Ketoglutarate-Dependent Enzyme Variants: Elucidating the Role of the Facial Triad Carboxylate in FIH.

Authors:  Shyam R Iyer; Vanessa D Chaplin; Michael J Knapp; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-09-10       Impact factor: 15.419

7.  Analysis of Jmjd6 cellular localization and testing for its involvement in histone demethylation.

Authors:  Phillip Hahn; Ivonne Wegener; Alison Burrells; Jens Böse; Alexander Wolf; Christian Erck; Danica Butler; Christopher J Schofield; Angelika Böttger; Andreas Lengeling
Journal:  PLoS One       Date:  2010-10-29       Impact factor: 3.240

Review 8.  Imposing function down a (cupin)-barrel: secondary structure and metal stereochemistry in the αKG-dependent oxygenases.

Authors:  John A Hangasky; Cornelius Y Taabazuing; Meaghan A Valliere; Michael J Knapp
Journal:  Metallomics       Date:  2013-04       Impact factor: 4.526

9.  Distribution and prediction of catalytic domains in 2-oxoglutarate dependent dioxygenases.

Authors:  Siddhartha Kundu
Journal:  BMC Res Notes       Date:  2012-08-04

10.  Selective inhibitors of the JMJD2 histone demethylases: combined nondenaturing mass spectrometric screening and crystallographic approaches.

Authors:  Nathan R Rose; Esther C Y Woon; Guy L Kingham; Oliver N F King; Jasmin Mecinović; Ian J Clifton; Stanley S Ng; Jobina Talib-Hardy; Udo Oppermann; Michael A McDonough; Christopher J Schofield
Journal:  J Med Chem       Date:  2010-02-25       Impact factor: 7.446

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