Literature DB >> 18610942

Effects of complex formation on vibrational circular dichroism spectra.

Valentin Paul Nicu1, Johannes Neugebauer, Evert Jan Baerends.   

Abstract

The determination of absolute configurations of chiral compounds using VCD is performed by comparing measured vibrational circular dichroism (VCD) spectra with calculated spectra. The process is based on two facts: the two enantiomers have rotational strengths of opposite sign, and the absolute configuration of the molecule used in the calculation is known. However, calculations on isolated molecules very often predict VCD intensities of very different magnitude or even different signs compared to the spectra measured in solution. Therefore, we have carefully analyzed what type of changes are induced by complexation of a solvent molecule to a solute. In the theoretical example of benzoyl-benzoic acid (in a particular chiral conformation) hydrogen bonded to the achiral NH3, we distinguish six cases, ranging from no or very small changes in the rotational strengths of solute modes (case A) to changes of sign of rotational strengths (case B), changes in magnitude (case C), nonzero rotational strengths for modes of the achiral solvent ("transfer of chirality", case D), large frequency shifts accompanied by giant enhancements of the IR and VCD intensities of modes involved in hydrogen bonding (case E), and emergence of new peaks (case F). In this work, all of these situations will be discussed and their origin will be elucidated. On the basis of our analysis, we advocate that codes for VCD rotational strength calculation should output for each mode i the angle xi(i) between the electric and magnetic transition dipole moments because only "robust modes" with xi far from 90 degrees should be used for the determination of the absolute configuration.

Entities:  

Year:  2008        PMID: 18610942     DOI: 10.1021/jp710201q

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  3 in total

1.  Enantiomeric characterization and structure elucidation of Otamixaban.

Authors:  Jian Shen; Jiping Yang; Winfried Heyse; Harald Schweitzer; Norbert Nagel; Doris Andert; Chengyue Zhu; Vincent Morrison; Gregory A Nemeth; Teng-Man Chen; Zhicheng Zhao; Timothy A Ayers; Yong-Mi Choi
Journal:  J Pharm Anal       Date:  2013-11-26

2.  Analysis of Vibrational Circular Dichroism Spectra of Peptides: A Generalized Coupled Oscillator Approach of a Small Peptide Model Using VCDtools.

Authors:  Mark A J Koenis; Lucas Visscher; Wybren J Buma; Valentin P Nicu
Journal:  J Phys Chem B       Date:  2020-02-21       Impact factor: 2.991

3.  GUI Implementation of VCDtools, A Program to Analyze Computed Vibrational Circular Dichroism Spectra.

Authors:  Mark A J Koenis; Olivier Visser; Lucas Visscher; Wybren J Buma; Valentin P Nicu
Journal:  J Chem Inf Model       Date:  2020-01-02       Impact factor: 4.956

  3 in total

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