Literature DB >> 18607616

The Microbial Rosetta Stone: a database system for tracking infectious microorganisms.

Kumar L Hari1, Alan T Goates, Ravi Jain, Aaron Towers, Vanessa S Harpin, James M Robertson, Mark R Wilson, Vivek S Samant, David J Ecker, John A McNeil, Bruce Budowle.   

Abstract

The Microbial Rosetta Stone (MRS) database system was developed to support the law enforcement community by providing a comprehensive and connected microbial pathogen data-information repository. To handle the myriad types of pathogen information required to support law enforcement and intelligence community investigations, a data model previously developed for medical and epidemiological information was enhanced. The data contained in MRS are a broad collection of expert-curated microbial pathogen information, but given the multitude of potential microbes and toxins that may be used in a biocrime or bioterrorism act continual information collection and updating are required. The MRS currently relates governmental community-specific pathogen priority lists, sequence metadata, taxonomic classifications, and diseases to strain collections, specific detection and treatment protocols, and experimental results for biothreat agents. The system contains software tools that help to load, curate, and connect the data. A shared MRS database can be populated in real time by multiple users in multiple locations. Querying tools also provide simple and powerful means to access the data in any part of the database.

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Year:  2008        PMID: 18607616     DOI: 10.1007/s00414-008-0247-1

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  11 in total

1.  A European centre to respond to threats of bioterrorism and major epidemics.

Authors:  M Tibayrenc
Journal:  Bull World Health Organ       Date:  2001       Impact factor: 9.408

2.  Public health. Building microbial forensics as a response to bioterrorism.

Authors:  Bruce Budowle; Steven E Schutzer; Anja Einseln; Lynda C Kelley; Anne C Walsh; Jenifer A L Smith; Babetta L Marrone; James Robertson; Joseph Campos
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

3.  Chemical synthesis of poliovirus cDNA: generation of infectious virus in the absence of natural template.

Authors:  Jeronimo Cello; Aniko V Paul; Eckard Wimmer
Journal:  Science       Date:  2002-07-11       Impact factor: 47.728

4.  Synthetic biology. Microbes made to order.

Authors:  Dan Ferber
Journal:  Science       Date:  2004-01-09       Impact factor: 47.728

5.  Microbial forensics: building a national capacity to investigate bioterrorism.

Authors:  Randall S Murch
Journal:  Biosecur Bioterror       Date:  2003

6.  Tracking the violent criminal offender through DNA typing profiles--a national database system concept.

Authors:  F S Baechtel; K L Monson; G E Forsen; B Budowle; J J Kearney
Journal:  EXS       Date:  1991

7.  Identification of anthrax toxin genes in a Bacillus cereus associated with an illness resembling inhalation anthrax.

Authors:  Alex R Hoffmaster; Jacques Ravel; David A Rasko; Gail D Chapman; Michael D Chute; Chung K Marston; Barun K De; Claudio T Sacchi; Collette Fitzgerald; Leonard W Mayer; Martin C J Maiden; Fergus G Priest; Margaret Barker; Lingxia Jiang; Regina Z Cer; Jennifer Rilstone; Scott N Peterson; Robbin S Weyant; Darrell R Galloway; Timothy D Read; Tanja Popovic; Claire M Fraser
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-21       Impact factor: 11.205

Review 8.  Microbial forensics: the next forensic challenge.

Authors:  Bruce Budowle; Randall Murch; Ranajit Chakraborty
Journal:  Int J Legal Med       Date:  2005-04-09       Impact factor: 2.791

9.  Biocrimes, microbial forensics, and the physician.

Authors:  Steven E Schutzer; Bruce Budowle; Ronald M Atlas
Journal:  PLoS Med       Date:  2005-09-27       Impact factor: 11.069

10.  mlstdbNet - distributed multi-locus sequence typing (MLST) databases.

Authors:  Keith A Jolley; Man-Suen Chan; Martin C J Maiden
Journal:  BMC Bioinformatics       Date:  2004-07-01       Impact factor: 3.169

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  2 in total

Review 1.  Are we ready for novel detection methods to treat respiratory pathogens in hospital-acquired pneumonia?

Authors:  Andrea Endimiani; Kristine M Hujer; Andrea M Hujer; Sebastian Kurz; Michael R Jacobs; David S Perlin; Robert A Bonomo
Journal:  Clin Infect Dis       Date:  2011-05       Impact factor: 9.079

2.  GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database.

Authors:  Lynn M Schriml; Cesar Arze; Suvarna Nadendla; Anu Ganapathy; Victor Felix; Anup Mahurkar; Katherine Phillippy; Aaron Gussman; Sam Angiuoli; Elodie Ghedin; Owen White; Neil Hall
Journal:  Nucleic Acids Res       Date:  2009-10-22       Impact factor: 16.971

  2 in total

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