Literature DB >> 18607091

Crystallization and preliminary X-ray analysis of a class II release factor RF3 from a sulfate-reducing bacterium.

Kiyohito Kihira1, Shuko Numata, Masaya Kitamura, Jun Kondo, Shinichi Terawaki, Yasuhito Shomura, Hirofumi Komori, Naoki Shibata, Yoshiki Higuchi.   

Abstract

Class II release factor 3 (RF3) from the sulfate-reducing bacterium Desulfovibrio vulgaris Miyazaki F, which promotes rapid dissociation of a class I release factor, has been overexpressed, purified and crystallized in complex with GDP at 293 K using the sitting-drop vapour-diffusion method. A data set was collected to 1.8 A resolution from a single crystal at 100 K using synchrotron radiation. The crystal belongs to space group P1, with unit-cell parameters a = 47.39, b = 82.80, c = 148.29 A, alpha = 104.21, beta = 89.78, gamma = 89.63 degrees . The asymmetric unit contains four molecules of the RF3-GDP complex. The Matthews coefficient was calculated to be 2.3 A(3) Da(-1) and the solvent content was estimated to be 46.6%.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18607091      PMCID: PMC2443967          DOI: 10.1107/S1744309108015583

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  16 in total

1.  A posttermination ribosomal complex is the guanine nucleotide exchange factor for peptide release factor RF3.

Authors:  A V Zavialov; R H Buckingham; M Ehrenberg
Journal:  Cell       Date:  2001-10-05       Impact factor: 41.582

2.  Release of peptide promoted by the GGQ motif of class 1 release factors regulates the GTPase activity of RF3.

Authors:  Andrei V Zavialov; Liliana Mora; Richard H Buckingham; Måns Ehrenberg
Journal:  Mol Cell       Date:  2002-10       Impact factor: 17.970

3.  Crystal structure and functional analysis of the eukaryotic class II release factor eRF3 from S. pombe.

Authors:  Chunguang Kong; Koichi Ito; Martin A Walsh; Miki Wada; Yuying Liu; Sundramurthy Kumar; David Barford; Yoshikazu Nakamura; Haiwei Song
Journal:  Mol Cell       Date:  2004-04-23       Impact factor: 17.970

4.  RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors.

Authors:  Haixiao Gao; Zhihong Zhou; Urmila Rawat; Chenhui Huang; Lamine Bouakaz; Chernhoe Wang; Zhihong Cheng; Yuying Liu; Andrey Zavialov; Richard Gursky; Suparna Sanyal; Måns Ehrenberg; Joachim Frank; Haiwei Song
Journal:  Cell       Date:  2007-06-01       Impact factor: 41.582

5.  Peptide chain termination. 3. Stimulation of in vitro termination.

Authors:  G Milman; J Goldstein; E Scolnick; T Caskey
Journal:  Proc Natl Acad Sci U S A       Date:  1969-05       Impact factor: 11.205

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Localization and characterization of the gene encoding release factor RF3 in Escherichia coli.

Authors:  G Grentzmann; D Brechemier-Baey; V Heurgue; L Mora; R H Buckingham
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-21       Impact factor: 11.205

8.  Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 A resolution.

Authors:  H Song; M R Parsons; S Rowsell; G Leonard; S E Phillips
Journal:  J Mol Biol       Date:  1999-01-22       Impact factor: 5.469

9.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.