Literature DB >> 18606994

Crystal structure of the yeast eIF4A-eIF4G complex: an RNA-helicase controlled by protein-protein interactions.

Patrick Schütz1, Mario Bumann, Anselm Erich Oberholzer, Christoph Bieniossek, Hans Trachsel, Michael Altmann, Ulrich Baumann.   

Abstract

Translation initiation factors eIF4A and eIF4G form, together with the cap-binding factor eIF4E, the eIF4F complex, which is crucial for recruiting the small ribosomal subunit to the mRNA 5' end and for subsequent scanning and searching for the start codon. eIF4A is an ATP-dependent RNA helicase whose activity is stimulated by binding to eIF4G. We report here the structure of the complex formed by yeast eIF4G's middle domain and full-length eIF4A at 2.6-A resolution. eIF4A shows an extended conformation where eIF4G holds its crucial DEAD-box sequence motifs in a productive conformation, thus explaining the stimulation of eIF4A's activity. A hitherto undescribed interaction involves the amino acid Trp-579 of eIF4G. Mutation to alanine results in decreased binding to eIF4A and a temperature-sensitive phenotype of yeast cells that carry a Trp579Ala mutation as its sole source for eIF4G. Conformational changes between eIF4A's closed and open state provide a model for its RNA-helicase activity.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18606994      PMCID: PMC2474498          DOI: 10.1073/pnas.0800418105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

Review 1.  Eukaryotic translation initiation factors and regulators.

Authors:  Nahum Sonenberg; Thomas E Dever
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

2.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

3.  The newly discovered Q motif of DEAD-box RNA helicases regulates RNA-binding and helicase activity.

Authors:  Olivier Cordin; N Kyle Tanner; Monique Doère; Patrick Linder; Josette Banroques
Journal:  EMBO J       Date:  2004-06-17       Impact factor: 11.598

Review 4.  Cap-dependent and cap-independent translation in eukaryotic systems.

Authors:  William C Merrick
Journal:  Gene       Date:  2004-05-12       Impact factor: 3.688

5.  An efficient one-step site-directed and site-saturation mutagenesis protocol.

Authors:  Lei Zheng; Ulrich Baumann; Jean-Louis Reymond
Journal:  Nucleic Acids Res       Date:  2004-08-10       Impact factor: 16.971

6.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

7.  Birth of the D-E-A-D box.

Authors:  P Linder; P F Lasko; M Ashburner; P Leroy; P J Nielsen; K Nishi; J Schnier; P P Slonimski
Journal:  Nature       Date:  1989-01-12       Impact factor: 49.962

8.  Expression of translation initiation factor 4A from yeast and mouse in Saccharomyces cerevisiae.

Authors:  A Prat; S R Schmid; P Buser; S Blum; H Trachsel; P J Nielsen; P Linder
Journal:  Biochim Biophys Acta       Date:  1990-08-27

9.  The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis.

Authors:  N Kyle Tanner; Olivier Cordin; Josette Banroques; Monique Doère; Patrick Linder
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

10.  Activation of translation complex eIF4F is essential for the genesis and maintenance of the malignant phenotype in human mammary epithelial cells.

Authors:  Svetlana Avdulov; Shunan Li; Van Michalek; David Burrichter; Mark Peterson; David M Perlman; J Carlos Manivel; Nahum Sonenberg; Douglas Yee; Peter B Bitterman; Vitaly A Polunovsky
Journal:  Cancer Cell       Date:  2004-06       Impact factor: 31.743

View more
  116 in total

Review 1.  Translational regulation in nutrigenomics.

Authors:  Botao Liu; Shu-Bing Qian
Journal:  Adv Nutr       Date:  2011-11-03       Impact factor: 8.701

2.  Plant cap-binding complexes eukaryotic initiation factors eIF4F and eIFISO4F: molecular specificity of subunit binding.

Authors:  Laura K Mayberry; M Leah Allen; Kelley R Nitka; Lara Campbell; Patricia A Murphy; Karen S Browning
Journal:  J Biol Chem       Date:  2011-09-30       Impact factor: 5.157

3.  Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex.

Authors:  Gretel Buchwald; Judith Ebert; Claire Basquin; Jerome Sauliere; Uma Jayachandran; Fulvia Bono; Hervé Le Hir; Elena Conti
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

4.  Bypassing of stems versus linear base-by-base inspection of mammalian mRNAs during ribosomal scanning.

Authors:  Irina S Abaeva; Assen Marintchev; Vera P Pisareva; Christopher U T Hellen; Tatyana V Pestova
Journal:  EMBO J       Date:  2010-11-26       Impact factor: 11.598

Review 5.  The role of the poly(A) binding protein in the assembly of the Cap-binding complex during translation initiation in plants.

Authors:  Daniel R Gallie
Journal:  Translation (Austin)       Date:  2014-10-30

6.  Crystal structure of the eIF4A-PDCD4 complex.

Authors:  Jeong Ho Chang; Yong Hyun Cho; Sun Young Sohn; Jung Min Choi; Ahreum Kim; Young Chang Kim; Sung Key Jang; Yunje Cho
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-09       Impact factor: 11.205

7.  Nup42 and IP6 coordinate Gle1 stimulation of Dbp5/DDX19B for mRNA export in yeast and human cells.

Authors:  Rebecca L Adams; Aaron C Mason; Laura Glass; Susan R Wente
Journal:  Traffic       Date:  2017-10-16       Impact factor: 6.215

Review 8.  Regulation of translation initiation in eukaryotes: mechanisms and biological targets.

Authors:  Nahum Sonenberg; Alan G Hinnebusch
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

9.  An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation.

Authors:  Shunsuke Imai; Parimal Kumar; Christopher U T Hellen; Victoria M D'Souza; Gerhard Wagner
Journal:  Nat Struct Mol Biol       Date:  2016-08-15       Impact factor: 15.369

10.  Crystallization and preliminary X-ray diffraction analysis of the MIF4G domain of DAP5.

Authors:  Filipp Frank; Geneviève Virgili; Nahum Sonenberg; Bhushan Nagar
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-12-25
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.