Literature DB >> 18606207

Mathematical modeling and sensitivity analysis of G1/S phase in the cell cycle including the DNA-damage signal transduction pathway.

Kazunari Iwamoto1, Yoshihiko Tashima, Hiroyuki Hamada, Yukihiro Eguchi, Masahiro Okamoto.   

Abstract

The cell cycle has checkpoint systems, which control G1/S, G2/M and G0/G1 phase transitions. When a normal cell suffers from DNA-damage, the signal transduction of DNA-damage causes the cell cycle arrest by using the checkpoint systems. Therefore, the elucidation of interaction between the signal transduction of DNA-damage and the checkpoint systems is an important problem. In this study, we constructed a novel mathematical model (proposed model) which integrated G1/S-checkpoint model with a signal transduction of DNA damage model and performed some numerical simulations. The proposed model realized some biological findings of G1/S phase with or without DNA-damage, which suggested that proposed model is biologically appropriate. Moreover, the results of sensitivity analysis of the proposed model indicated the predominant factors of G1/S phase and some factors concerned with the transformation of cells.

Mesh:

Year:  2008        PMID: 18606207     DOI: 10.1016/j.biosystems.2008.05.016

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  10 in total

Review 1.  The emerging paradigm of network medicine in the study of human disease.

Authors:  Stephen Y Chan; Joseph Loscalzo
Journal:  Circ Res       Date:  2012-07-20       Impact factor: 17.367

2.  A general framework for modeling growth and division of mammalian cells.

Authors:  John H Gauthier; Phillip I Pohl
Journal:  BMC Syst Biol       Date:  2011-01-06

3.  Understanding dynamics using sensitivity analysis: caveat and solution.

Authors:  Thanneer M Perumal; Rudiyanto Gunawan
Journal:  BMC Syst Biol       Date:  2011-03-15

4.  Communicating oscillatory networks: frequency domain analysis.

Authors:  Adaoha E C Ihekwaba; Sean Sedwards
Journal:  BMC Syst Biol       Date:  2011-12-22

5.  System modeling reveals the molecular mechanisms of HSC cell cycle alteration mediated by Maff and Egr3 under leukemia.

Authors:  Rudong Li; Yin Wang; Hui Cheng; Gang Liu; Tao Cheng; Yunlong Liu; Lei Liu
Journal:  BMC Syst Biol       Date:  2017-10-03

6.  Sophisticated framework between cell cycle arrest and apoptosis induction based on p53 dynamics.

Authors:  Hiroyuki Hamada; Yoshihiko Tashima; Yu Kisaka; Kazunari Iwamoto; Taizo Hanai; Yukihiro Eguchi; Masahiro Okamoto
Journal:  PLoS One       Date:  2009-03-10       Impact factor: 3.240

7.  Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation.

Authors:  Roberta Alfieri; Matteo Barberis; Ferdinando Chiaradonna; Daniela Gaglio; Luciano Milanesi; Marco Vanoni; Edda Klipp; Lilia Alberghina
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

8.  In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae.

Authors:  Flavio Amara; Riccardo Colombo; Paolo Cazzaniga; Dario Pescini; Attila Csikász-Nagy; Marco Muzi Falconi; Daniela Besozzi; Paolo Plevani
Journal:  BMC Syst Biol       Date:  2013-03-20

9.  Differentiation resistance through altered retinoblastoma protein function in acute lymphoblastic leukemia: in silico modeling of the deregulations in the G1/S restriction point pathway.

Authors:  Eleftherios Ouzounoglou; Dimitra Dionysiou; Georgios S Stamatakos
Journal:  BMC Syst Biol       Date:  2016-03-01

10.  To senesce or not to senesce: how primary human fibroblasts decide their cell fate after DNA damage.

Authors:  Gabriel Kollarovic; Maja Studencka; Lyubomira Ivanova; Claudia Lauenstein; Kristina Heinze; Anastasiya Lapytsko; Soheil Rastgou Talemi; Ana Sofia Figueiredo; Jörg Schaber
Journal:  Aging (Albany NY)       Date:  2016-01       Impact factor: 5.682

  10 in total

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