Literature DB >> 18604222

Towards environmental systems biology of Shewanella.

James K Fredrickson1, Margaret F Romine, Alexander S Beliaev, Jennifer M Auchtung, Michael E Driscoll, Timothy S Gardner, Kenneth H Nealson, Andrei L Osterman, Grigoriy Pinchuk, Jennifer L Reed, Dmitry A Rodionov, Jorge L M Rodrigues, Daad A Saffarini, Margrethe H Serres, Alfred M Spormann, Igor B Zhulin, James M Tiedje.   

Abstract

Bacteria of the genus Shewanella are known for their versatile electron-accepting capacities, which allow them to couple the decomposition of organic matter to the reduction of the various terminal electron acceptors that they encounter in their stratified environments. Owing to their diverse metabolic capabilities, shewanellae are important for carbon cycling and have considerable potential for the remediation of contaminated environments and use in microbial fuel cells. Systems-level analysis of the model species Shewanella oneidensis MR-1 and other members of this genus has provided new insights into the signal-transduction proteins, regulators, and metabolic and respiratory subsystems that govern the remarkable versatility of the shewanellae.

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Year:  2008        PMID: 18604222     DOI: 10.1038/nrmicro1947

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  257 in total

Review 1.  Advantages and limitations of current network inference methods.

Authors:  Riet De Smet; Kathleen Marchal
Journal:  Nat Rev Microbiol       Date:  2010-08-31       Impact factor: 60.633

2.  Probing electron transfer mechanisms in Shewanella oneidensis MR-1 using a nanoelectrode platform and single-cell imaging.

Authors:  Xiaocheng Jiang; Jinsong Hu; Lisa A Fitzgerald; Justin C Biffinger; Ping Xie; Bradley R Ringeisen; Charles M Lieber
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-13       Impact factor: 11.205

3.  Microbial and mineralogical characterizations of soils collected from the deep biosphere of the former Homestake gold mine, South Dakota.

Authors:  Gurdeep Rastogi; Shariff Osman; Ravi Kukkadapu; Mark Engelhard; Parag A Vaishampayan; Gary L Andersen; Rajesh K Sani
Journal:  Microb Ecol       Date:  2010-04-13       Impact factor: 4.552

4.  Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1.

Authors:  Matthew L Bendall; Khai Luong; Kelly M Wetmore; Matthew Blow; Jonas Korlach; Adam Deutschbauer; Rex R Malmstrom
Journal:  J Bacteriol       Date:  2013-08-30       Impact factor: 3.490

5.  A Hybrid Extracellular Electron Transfer Pathway Enhances the Survival of Vibrio natriegens.

Authors:  Bridget E Conley; Matthew T Weinstock; Daniel R Bond; Jeffrey A Gralnick
Journal:  Appl Environ Microbiol       Date:  2020-09-17       Impact factor: 4.792

6.  Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth.

Authors:  Birgit Luef; Sirine C Fakra; Roseann Csencsits; Kelly C Wrighton; Kenneth H Williams; Michael J Wilkins; Kenneth H Downing; Philip E Long; Luis R Comolli; Jillian F Banfield
Journal:  ISME J       Date:  2012-10-04       Impact factor: 10.302

7.  Suppression of fabB Mutation by fabF1 Is Mediated by Transcription Read-through in Shewanella oneidensis.

Authors:  Meng Li; Qiu Meng; Huihui Fu; Qixia Luo; Haichun Gao
Journal:  J Bacteriol       Date:  2016-10-21       Impact factor: 3.490

8.  Protection from oxidative stress relies mainly on derepression of OxyR-dependent KatB and Dps in Shewanella oneidensis.

Authors:  Yaoming Jiang; Yangyang Dong; Qixia Luo; Ning Li; Genfu Wu; Haichun Gao
Journal:  J Bacteriol       Date:  2013-11-08       Impact factor: 3.490

9.  Transformation of organic matter in a Barents Sea sediment profile: coupled geochemical and microbiological processes.

Authors:  Mark A Stevenson; Johan C Faust; Luiza L Andrade; Felipe S Freitas; Neil D Gray; Karen Tait; Katharine R Hendry; Robert G Hilton; Sian F Henley; Allyson Tessin; Peter Leary; Sonia Papadaki; Ailbe Ford; Christian März; Geoffrey D Abbott
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-08-31       Impact factor: 4.226

10.  Genomic plasticity enables a secondary electron transport pathway in Shewanella oneidensis.

Authors:  M Schicklberger; G Sturm; J Gescher
Journal:  Appl Environ Microbiol       Date:  2012-12-07       Impact factor: 4.792

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