Literature DB >> 18603812

RNA extraction from various recalcitrant plant tissues with a cethyltrimethylammonium bromide-containing buffer followed by an acid guanidium thiocyanate-phenol-chloroform treatment.

Yuji Suzuki1, Tadahiko Mae, Amane Makino.   

Abstract

High-quality total RNA was extracted using a cethyltrimethylammonium bromide-containing buffer followed by an acid guanidium thiocyanate-phenol-chloroform treatment from recalcitrant plant tissues such as tree leaves (pine, Norway spruce, ginkgo, Japanese cedar, rose), flowers (rose, Lotus japonicus) and storage tissues (seeds of Lotus japonicus and rice, sweet potato tuber, banana fruit). This protocol greatly reduced the time required for RNA extraction.

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Year:  2008        PMID: 18603812     DOI: 10.1271/bbb.80084

Source DB:  PubMed          Journal:  Biosci Biotechnol Biochem        ISSN: 0916-8451            Impact factor:   2.043


  11 in total

1.  De novo transcriptome analysis of needles of Thujopsis dolabrata var. hondae.

Authors:  Shiro Suzuki; Hideyuki Suzuki; Koji Tanaka; Masaomi Yamamura; Daisuke Shibata; Toshiaki Umezawa
Journal:  Plant Biotechnol (Tokyo)       Date:  2019       Impact factor: 1.133

2.  Identification and expression analysis of four 14-3-3 genes during fruit ripening in banana (Musa acuminata L. AAA group, cv. Brazilian).

Authors:  Mei-Ying Li; Bi-Yu Xu; Ju-Hua Liu; Xiao-Liang Yang; Jian-Bin Zhang; Cai-Hong Jia; Li-Cheng Ren; Zhi-Qiang Jin
Journal:  Plant Cell Rep       Date:  2011-10-19       Impact factor: 4.570

3.  Molecular cloning and functional analysis of one ZEITLUPE homolog GmZTL3 in soybean.

Authors:  Zheng-Gang Xue; Xiao-Mei Zhang; Chen-Fang Lei; Xin-Jian Chen; Yong-Fu Fu
Journal:  Mol Biol Rep       Date:  2011-05-27       Impact factor: 2.316

4.  A phenol/chloroform-free method to extract nucleic acids from recalcitrant, woody tropical species for gene expression and sequencing.

Authors:  François F Barbier; Tinashe G Chabikwa; Muhammad U Ahsan; Stacey E Cook; Rosanna Powell; Milos Tanurdzic; Christine A Beveridge
Journal:  Plant Methods       Date:  2019-06-05       Impact factor: 4.993

5.  Reproducible RNA preparation from sugarcane and citrus for functional genomic applications.

Authors:  Mona B Damaj; Phillip D Beremand; Marco T Buenrostro-Nava; Beth Riedel; Joe J Molina; Siva P Kumpatla; Terry L Thomas; T Erik Mirkov
Journal:  Int J Plant Genomics       Date:  2010-01-27

6.  VuDREB2A, a novel DREB2-type transcription factor in the drought-tolerant legume cowpea, mediates DRE-dependent expression of stress-responsive genes and confers enhanced drought resistance in transgenic Arabidopsis.

Authors:  Ayan Sadhukhan; Yasufumi Kobayashi; Yuriko Kobayashi; Mutsutomo Tokizawa; Yoshiharu Y Yamamoto; Satoshi Iuchi; Hiroyuki Koyama; Sanjib Kumar Panda; Lingaraj Sahoo
Journal:  Planta       Date:  2014-07-17       Impact factor: 4.116

7.  LogSpin: a simple, economical and fast method for RNA isolation from infected or healthy plants and other eukaryotic tissues.

Authors:  Hila Yaffe; Kobi Buxdorf; Illil Shapira; Shachaf Ein-Gedi; Michal Moyal-Ben Zvi; Eyal Fridman; Menachem Moshelion; Maggie Levy
Journal:  BMC Res Notes       Date:  2012-01-19

8.  Improve sample preparation process for miRNA isolation from the culture cells by using silica fiber membrane.

Authors:  Wen-Pin Hu; Yu-Chi Chen; Wen-Yih Chen
Journal:  Sci Rep       Date:  2020-12-03       Impact factor: 4.379

9.  Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR.

Authors:  Ruibo Hu; Chengming Fan; Hongyu Li; Qingzhu Zhang; Yong-Fu Fu
Journal:  BMC Mol Biol       Date:  2009-09-28       Impact factor: 2.946

10.  Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars.

Authors:  Jungeun Kim; June Hyun Park; Chan Ju Lim; Jae Yun Lim; Jee-Youn Ryu; Bong-Woo Lee; Jae-Pil Choi; Woong Bom Kim; Ha Yeon Lee; Yourim Choi; Donghyun Kim; Cheol-Goo Hur; Sukweon Kim; Yoo-Sun Noh; Chanseok Shin; Suk-Yoon Kwon
Journal:  BMC Genomics       Date:  2012-11-21       Impact factor: 3.969

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