Literature DB >> 18601353

Role of attractive methane-water interactions in the potential of mean force between methane molecules in water.

D Asthagiri1, Safir Merchant, Lawrence R Pratt.   

Abstract

On the basis of a Gaussian quasichemical model of hydration, a model of non-van der Waals character, we explore the role of attractive methane-water interactions in the hydration of methane and in the potential of mean force between two methane molecules in water. We find that the hydration of methane is dominated by packing and a mean-field energetic contribution. Contributions beyond the mean-field term are unimportant in the hydration phenomena for a hydrophobic solute such as methane. Attractive solute-water interactions make a net repulsive contribution to these pair potentials of mean force. With no conditioning, the observed distributions of binding energies are super-Gaussian and can be effectively modeled by a Gumbel (extreme value) distribution. This further supports the view that the characteristic form of the unconditioned distribution in the high-epsilon tail is due to energetic interactions with a small number of molecules. Generalized extreme value distributions also effectively model the results with minimal conditioning, but in those cases the distributions are sufficiently narrow that the details of their shape are not significant.

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Year:  2008        PMID: 18601353     DOI: 10.1063/1.2944252

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Intramolecular Interactions Overcome Hydration to Drive the Collapse Transition of Gly15.

Authors:  D Asthagiri; Deepti Karandur; Dheeraj S Tomar; B Montgomery Pettitt
Journal:  J Phys Chem B       Date:  2017-08-21       Impact factor: 2.991

2.  Ion selectivity in the KcsA potassium channel from the perspective of the ion binding site.

Authors:  Purushottam D Dixit; Safir Merchant; D Asthagiri
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

3.  Molecular-scale hydrophobic interactions between hard-sphere reference solutes are attractive and endothermic.

Authors:  Mangesh I Chaudhari; Sinead A Holleran; Henry S Ashbaugh; Lawrence R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

4.  Importance of Hydrophilic Hydration and Intramolecular Interactions in the Thermodynamics of Helix-Coil Transition and Helix-Helix Assembly in a Deca-Alanine Peptide.

Authors:  Dheeraj S Tomar; Valéry Weber; B Montgomery Pettitt; D Asthagiri
Journal:  J Phys Chem B       Date:  2015-12-22       Impact factor: 2.991

5.  A Permeability Study of O2 and the Trace Amine p-Tyramine through Model Phosphatidylcholine Bilayers.

Authors:  Bryan W Holland; Mark D Berry; C G Gray; Bruno Tomberli
Journal:  PLoS One       Date:  2015-06-18       Impact factor: 3.240

6.  Conditional solvation thermodynamics of isoleucine in model peptides and the limitations of the group-transfer model.

Authors:  Dheeraj S Tomar; Valéry Weber; B Montgomery Pettitt; D Asthagiri
Journal:  J Phys Chem B       Date:  2014-04-03       Impact factor: 2.991

  6 in total

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