Literature DB >> 18600572

From virtuality to reality - Virtual screening in lead discovery and lead optimization: a medicinal chemistry perspective.

Ulrich Rester1.   

Abstract

Drug discovery and development is an interdisciplinary, expensive and time-consuming process. Scientific advancements during the past two decades have altered the way pharmaceutical research produces novel bio-active molecules. Advances in computational techniques and hardware solutions have enabled in silico methods, and in particular virtual screening, to speed up modern lead identification and lead optimization. Recent successes have proven the power of combining virtual screening with complementary and synergistic biophysical methods, such as X-ray crystallography, NMR spectroscopy and isothermal titration calorimetry (ITC). This review addresses key issues, challenges and recent improvements of virtual screening methods and strategies. Examples highlighting the impact of an integrated virtual screening and biophysical characterization platform in the lead identification and optimization process are presented and discussed.

Mesh:

Year:  2008        PMID: 18600572

Source DB:  PubMed          Journal:  Curr Opin Drug Discov Devel        ISSN: 1367-6733


  41 in total

1.  Towards the comprehensive, rapid, and accurate prediction of the favorable tautomeric states of drug-like molecules in aqueous solution.

Authors:  Jeremy R Greenwood; David Calkins; Arron P Sullivan; John C Shelley
Journal:  J Comput Aided Mol Des       Date:  2010-03-31       Impact factor: 3.686

Review 2.  Virtual screening: an endless staircase?

Authors:  Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2010-04       Impact factor: 84.694

Review 3.  Fragment-based QSAR: perspectives in drug design.

Authors:  Lívia B Salum; Adriano D Andricopulo
Journal:  Mol Divers       Date:  2009-01-31       Impact factor: 2.943

4.  Protein-ligand interaction studies of retinol-binding protein 3 with herbal molecules using AutoDock for the management of Eales' disease.

Authors:  Anshul Tiwari; Sandeep Saxena; A B Pant; Prachi Srivastava
Journal:  J Ocul Biol Dis Infor       Date:  2012-12-30

5.  Discovery of novel chemoeffectors and rational design of Escherichia coli chemoreceptor specificity.

Authors:  Shuangyu Bi; Daqi Yu; Guangwei Si; Chunxiong Luo; Tongqing Li; Qi Ouyang; Vladimir Jakovljevic; Victor Sourjik; Yuhai Tu; Luhua Lai
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

6.  A novel, customizable and optimizable parameter method using spherical harmonics for molecular shape similarity comparisons.

Authors:  Chaoqian Cai; Jiayu Gong; Xiaofeng Liu; Hualiang Jiang; Daqi Gao; Honglin Li
Journal:  J Mol Model       Date:  2011-07-30       Impact factor: 1.810

7.  A Discovery Funnel for Nucleic Acid Binding Drug Candidates.

Authors:  Patrick A Holt; Robert Buscaglia; John O Trent; Jonathan B Chaires
Journal:  Drug Dev Res       Date:  2011-03-01       Impact factor: 4.360

8.  Outcome of a workshop on applications of protein models in biomedical research.

Authors:  Torsten Schwede; Andrej Sali; Barry Honig; Michael Levitt; Helen M Berman; David Jones; Steven E Brenner; Stephen K Burley; Rhiju Das; Nikolay V Dokholyan; Roland L Dunbrack; Krzysztof Fidelis; Andras Fiser; Adam Godzik; Yuanpeng Janet Huang; Christine Humblet; Matthew P Jacobson; Andrzej Joachimiak; Stanley R Krystek; Tanja Kortemme; Andriy Kryshtafovych; Gaetano T Montelione; John Moult; Diana Murray; Roberto Sanchez; Tobin R Sosnick; Daron M Standley; Terry Stouch; Sandor Vajda; Max Vasquez; John D Westbrook; Ian A Wilson
Journal:  Structure       Date:  2009-02-13       Impact factor: 5.006

9.  Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity.

Authors:  Flavien Quintus; Olivier Sperandio; Julien Grynberg; Michel Petitjean; Pierre Tuffery
Journal:  BMC Bioinformatics       Date:  2009-08-11       Impact factor: 3.169

10.  A kernel for open source drug discovery in tropical diseases.

Authors:  Leticia Ortí; Rodrigo J Carbajo; Ursula Pieper; Narayanan Eswar; Stephen M Maurer; Arti K Rai; Ginger Taylor; Matthew H Todd; Antonio Pineda-Lucena; Andrej Sali; Marc A Marti-Renom
Journal:  PLoS Negl Trop Dis       Date:  2009-04-21
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