Literature DB >> 18595046

Group contributions for estimating standard gibbs energies of formation of biochemical compounds in aqueous solution.

M L Mavrovouniotis1.   

Abstract

A method is presented for the estimation of the standard Gibbs energies of formation of biochemical compounds (and hence the Gibbs energies and equilibrium constants of biochemical reactions) from the contributions of groups. The method employs a large set of groups and special corrections. The contributions were estimated via multiple linear regression, using screened and weighted literature data. For most of the data employed, the error is less than 2 kcal/mol. The method provides a useful first approximation to Gibbs energies and equilibrium constants in biochemical systems.

Year:  1990        PMID: 18595046     DOI: 10.1002/bit.260361013

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  49 in total

1.  Chemical constraints governing the origin of metabolism: the thermodynamic landscape of carbon group transformations under mild aqueous conditions.

Authors:  Arthur L Weber
Journal:  Orig Life Evol Biosph       Date:  2002-08       Impact factor: 1.950

2.  Sugars as the optimal biosynthetic carbon substrate of aqueous life throughout the universe.

Authors:  A L Weber
Journal:  Orig Life Evol Biosph       Date:  2000-02       Impact factor: 1.950

3.  IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities.

Authors:  Kristian Rother; Sabrina Hoffmann; Sascha Bulik; Andreas Hoppe; Johann Gasteiger; Herrmann-Georg Holzhütter
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

4.  Substructural fragments: an universal language to encode reactions, molecular and supramolecular structures.

Authors:  A Varnek; D Fourches; F Hoonakker; V P Solov'ev
Journal:  J Comput Aided Mol Des       Date:  2005-11-16       Impact factor: 3.686

5.  The sugar model: catalytic flow reactor dynamics of pyruvaldehyde synthesis from triose catalyzed by poly-l-lysine contained in a dialyzer.

Authors:  A L Weber
Journal:  Orig Life Evol Biosph       Date:  2001-06       Impact factor: 1.950

6.  Group contribution method for thermodynamic analysis of complex metabolic networks.

Authors:  Matthew D Jankowski; Christopher S Henry; Linda J Broadbelt; Vassily Hatzimanikatis
Journal:  Biophys J       Date:  2008-08       Impact factor: 4.033

7.  Kinetics and yields of pesticide biodegradation at low substrate concentrations and under conditions restricting assimilable organic carbon.

Authors:  Damian E Helbling; Frederik Hammes; Thomas Egli; Hans-Peter E Kohler
Journal:  Appl Environ Microbiol       Date:  2013-12-06       Impact factor: 4.792

8.  Quantitative assessment of thermodynamic constraints on the solution space of genome-scale metabolic models.

Authors:  Joshua J Hamilton; Vivek Dwivedi; Jennifer L Reed
Journal:  Biophys J       Date:  2013-07-16       Impact factor: 4.033

9.  Thermodynamics-based metabolic flux analysis.

Authors:  Christopher S Henry; Linda J Broadbelt; Vassily Hatzimanikatis
Journal:  Biophys J       Date:  2006-12-15       Impact factor: 4.033

Review 10.  Problems with the microbial production of butanol.

Authors:  Yan-Ning Zheng; Liang-Zhi Li; Mo Xian; Yu-Jiu Ma; Jian-Ming Yang; Xin Xu; Dong-Zhi He
Journal:  J Ind Microbiol Biotechnol       Date:  2009-06-27       Impact factor: 3.346

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