Literature DB >> 18593744

A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype.

Yoshihiro Ohmori1, Mafumi Abiko, Akira Horibata, Hiro-Yuki Hirano.   

Abstract

The YABBY gene DROOPING LEAF (DL) regulates midrib formation in the leaves and carpel specification in the flowers of rice (Oryza sativa L). We found a new dl allele (dl-5) that caused a mild phenotype in the descendants of a mutable line, IM294. In plants homozygous for this allele, midrib structures were formed but their sizes were reduced. Molecular analysis revealed that a transposon, Ping, was inserted in the fourth intron of DL. Together with mPing and Pong, Ping is a member of a transposon family that was first identified as a group of active transposable elements in rice. Our finding of the Ping insertion in the DL gene is a first indication that Ping is active in planta, and that it can be transposed and integrated in a new locus. Ping seems to be still active because it was excised from intron 4 of DL at a relatively high frequency in rice calli. Real-time PCR analysis and in situ hybridization indicated that DL transcript levels were reduced in dl-5 without alterations in the spatial expression pattern of the DL gene. The reduction of DL expression may be due to inefficient splicing of the large intron caused by Ping insertion. By comparing the expression levels of DL and leaf phenotypes in the dl mutants with different severities, we confirmed our previous hypothesis that DL promotes cell proliferation in the central region of leaf primordia, and that this cell proliferation is critical for midrib formation in the mature leaves.

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Year:  2008        PMID: 18593744     DOI: 10.1093/pcp/pcn093

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  16 in total

1.  The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet.

Authors:  Wakana Tanaka; Taiyo Toriba; Yoshihiro Ohmori; Akiko Yoshida; Arata Kawai; Tomoko Mayama-Tsuchida; Hiroaki Ichikawa; Nobutaka Mitsuda; Masaru Ohme-Takagi; Hiro-Yuki Hirano
Journal:  Plant Cell       Date:  2012-01-27       Impact factor: 11.277

2.  Reverse transcriptase and intron number evolution.

Authors:  Kemin Zhou; Alan Kuo; Igor V Grigoriev
Journal:  Stem Cell Investig       Date:  2014-09-28

3.  Functional analysis of the HS185 regulatory element in the rice HSP70 promoter.

Authors:  Yu-Man Zhang; Yu-Mei Zheng; Na Xiao; Li-Na Wang; Yao Zhang; Rong-Xiang Fang; Xiao-Ying Chen
Journal:  Mol Biol Rep       Date:  2011-06-03       Impact factor: 2.316

4.  Maize YABBY Genes drooping leaf1 and drooping leaf2 Regulate Plant Architecture.

Authors:  Josh Strable; Jason G Wallace; Erica Unger-Wallace; Sarah Briggs; Peter J Bradbury; Edward S Buckler; Erik Vollbrecht
Journal:  Plant Cell       Date:  2017-07-11       Impact factor: 11.277

5.  Identification of alleles of carotenoid pathway genes important for zeaxanthin accumulation in potato tubers.

Authors:  Anne-Marie A Wolters; Jan G A M L Uitdewilligen; Bjorn A Kloosterman; Ronald C B Hutten; Richard G F Visser; Herman J van Eck
Journal:  Plant Mol Biol       Date:  2010-05-19       Impact factor: 4.076

6.  Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.).

Authors:  Andrej Benjak; Stéphanie Boué; Astrid Forneck; Josep M Casacuberta
Journal:  Genome Biol Evol       Date:  2009-05-20       Impact factor: 3.416

7.  Characterization of a Crabs Claw Gene in basal eudicot species Epimedium sagittatum (Berberidaceae).

Authors:  Wei Sun; Wenjun Huang; Zhineng Li; Haiyan Lv; Hongwen Huang; Ying Wang
Journal:  Int J Mol Sci       Date:  2013-01-08       Impact factor: 5.923

8.  Mobilizing the genome of Lepidoptera through novel sequence gains and end creation by non-autonomous Lep1 Helitrons.

Authors:  Brad S Coates; Richard L Hellmich; David M Grant; Craig A Abel
Journal:  DNA Res       Date:  2011-11-15       Impact factor: 4.458

9.  Abundant degenerate miniature inverted-repeat transposable elements in genomes of epichloid fungal endophytes of grasses.

Authors:  Damien J Fleetwood; Anar K Khan; Richard D Johnson; Carolyn A Young; Shipra Mittal; Ruth E Wrenn; Uljana Hesse; Simon J Foster; Christopher L Schardl; Barry Scott
Journal:  Genome Biol Evol       Date:  2011-09-26       Impact factor: 3.416

10.  Characterization of autonomous Dart1 transposons belonging to the hAT superfamily in rice.

Authors:  Zenpei Shimatani; Kyoko Takagi; Chang-Ho Eun; Masahiko Maekawa; Hiroyuki Takahara; Atsushi Hoshino; Qian Qian; Rie Terada; Yasuyo Johzuka-Hisatomi; Shigeru Iida; Kazuo Tsugane
Journal:  Mol Genet Genomics       Date:  2009-01-03       Impact factor: 3.291

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