Literature DB >> 18583347

TbRGG2, an essential RNA editing accessory factor in two Trypanosoma brucei life cycle stages.

John C Fisk1, Michelle L Ammerman, Vladimir Presnyak, Laurie K Read.   

Abstract

In the mitochondria of kinetoplastid protozoa, including Trypanosoma brucei, RNA editing inserts and/or deletes uridines from pre-mRNAs to produce mature, translatable mRNAs. RNA editing is carried out by several related multiprotein complexes known as editosomes, which contain all of the enzymatic components required for catalysis of editing. In addition, noneditosome accessory factors necessary for editing of specific RNAs have also been described. Here, we report the in vitro and in vivo characterization of the mitochondrial TbRGG2 protein (originally termed TbRGGm) and demonstrate that it acts as an editing accessory factor. TbRGG2 is an RNA-binding protein with a preference for poly(U). TbRGG2 protein levels are up-regulated 10-fold in procyclic form T. brucei compared with bloodstream forms. Nevertheless, the protein is essential for growth in both life cycle stages. TbRGG2 associates with RNase-sensitive and RNase-insensitive mitochondrial complexes, and a small fraction of the protein co-immunoprecipitates with editosomes. RNA interference-mediated depletion of TbRGG2 in both procyclic and bloodstream form T. brucei leads to a dramatic decrease in pan-edited RNAs and in some cases a corresponding increase in the pre-edited RNA. TbRGG2 down-regulation also results in moderate stabilization of never-edited and minimally edited RNAs. Thus, our data are consistent with a model in which TbRGG2 is multifunctional, strongly facilitating the editing of pan-edited RNAs and modestly destabilizing minimally edited and never-edited RNAs. This is the first example of an RNA editing accessory factor that functions in the mammalian infective T. brucei life cycle stage.

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Year:  2008        PMID: 18583347      PMCID: PMC2516992          DOI: 10.1074/jbc.M801021200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  46 in total

1.  The N-terminal tandem repeat region of human prion protein reduces copper: role of tryptophan residues.

Authors:  F H Ruiz; E Silva; N C Inestrosa
Journal:  Biochem Biophys Res Commun       Date:  2000-03-16       Impact factor: 3.575

2.  Compositionally and functionally distinct editosomes in Trypanosoma brucei.

Authors:  Aswini K Panigrahi; Nancy Lewis Ernst; Gonzalo J Domingo; Michele Fleck; Reza Salavati; Kenneth D Stuart
Journal:  RNA       Date:  2006-04-12       Impact factor: 4.942

3.  Differential effects of arginine methylation on RBP16 mRNA binding, guide RNA (gRNA) binding, and gRNA-containing ribonucleoprotein complex (gRNP) formation.

Authors:  Christopher C Goulah; Laurie K Read
Journal:  J Biol Chem       Date:  2007-01-17       Impact factor: 5.157

4.  The two RNA ligases of the Trypanosoma brucei RNA editing complex: cloning the essential band IV gene and identifying the band V gene.

Authors:  L N Rusché; C E Huang; K J Piller; M Hemann; E Wirtz; B Sollner-Webb
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

5.  Identification of candidate mitochondrial RNA editing ligases from Trypanosoma brucei.

Authors:  M T McManus; M Shimamura; J Grams; S L Hajduk
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

6.  Arginine methylation regulates mitochondrial gene expression in Trypanosoma brucei through multiple effector proteins.

Authors:  Christopher C Goulah; Michel Pelletier; Laurie K Read
Journal:  RNA       Date:  2006-06-14       Impact factor: 4.942

7.  Identification and molecular characterization of two novel Trypanosoma cruzi genes encoding polypeptides sharing sequence motifs found in proteins involved in RNA editing reactions.

Authors:  A Ouaissi; B Vergnes; M Borges; E Guilvard
Journal:  Gene       Date:  2000-08-08       Impact factor: 3.688

Review 8.  SPT genes: key players in the regulation of transcription, chromatin structure and other cellular processes.

Authors:  Y Yamaguchi; T Narita; N Inukai; T Wada; H Handa
Journal:  J Biochem       Date:  2001-02       Impact factor: 3.387

9.  Kinetoplastid RNA-editing-associated protein 1 (REAP-1): a novel editing complex protein with repetitive domains.

Authors:  S Madison-Antenucci; R S Sabatini; V W Pollard; S L Hajduk
Journal:  EMBO J       Date:  1998-11-02       Impact factor: 11.598

10.  RNA chaperone activity and RNA-binding properties of the E. coli protein StpA.

Authors:  Oliver Mayer; Lukas Rajkowitsch; Christina Lorenz; Robert Konrat; Renée Schroeder
Journal:  Nucleic Acids Res       Date:  2007-01-31       Impact factor: 16.971

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  51 in total

1.  TbRGG2 facilitates kinetoplastid RNA editing initiation and progression past intrinsic pause sites.

Authors:  Michelle L Ammerman; Vladimir Presnyak; John C Fisk; Bardees M Foda; Laurie K Read
Journal:  RNA       Date:  2010-09-20       Impact factor: 4.942

2.  The MRB1 complex functions in kinetoplastid RNA processing.

Authors:  Nathalie Acestor; Aswini K Panigrahi; Jason Carnes; Alena Zíková; Kenneth D Stuart
Journal:  RNA       Date:  2008-12-18       Impact factor: 4.942

3.  Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase.

Authors:  Hassan Hashimi; Zdenka Cicová; Lucie Novotná; Yan-Zi Wen; Julius Lukes
Journal:  RNA       Date:  2009-02-18       Impact factor: 4.942

4.  Snapshots of the RNA editing machine in trypanosomes captured at different assembly stages in vivo.

Authors:  Monika M Golas; Cordula Böhm; Bjoern Sander; Kerstin Effenberger; Michael Brecht; Holger Stark; H Ulrich Göringer
Journal:  EMBO J       Date:  2009-02-05       Impact factor: 11.598

5.  Guide RNA biogenesis involves a novel RNase III family endoribonuclease in Trypanosoma brucei.

Authors:  Bhaskara Reddy Madina; Gokulan Kuppan; Ajay A Vashisht; Yu-He Liang; Kurtis M Downey; James A Wohlschlegel; Xinhua Ji; Sing-Hoi Sze; James C Sacchettini; Laurie K Read; Jorge Cruz-Reyes
Journal:  RNA       Date:  2011-08-02       Impact factor: 4.942

6.  A protein-protein interaction map of trypanosome ~20S editosomes.

Authors:  Achim Schnaufer; Meiting Wu; Young-jun Park; Tadashi Nakai; Junpeng Deng; Rose Proff; Wim G J Hol; Kenneth D Stuart
Journal:  J Biol Chem       Date:  2009-12-14       Impact factor: 5.157

7.  Distinct and overlapping functions of MRP1/2 and RBP16 in mitochondrial RNA metabolism.

Authors:  John C Fisk; Vladimir Presnyak; Michelle L Ammerman; Laurie K Read
Journal:  Mol Cell Biol       Date:  2009-07-20       Impact factor: 4.272

8.  An arginine-glycine-rich RNA binding protein impacts the abundance of specific mRNAs in the mitochondria of Trypanosoma brucei.

Authors:  Natalie M McAdams; Michelle L Ammerman; Julee Nanduri; Kaylen Lott; John C Fisk; Laurie K Read
Journal:  Eukaryot Cell       Date:  2014-12-05

9.  Uridine insertion/deletion RNA editing in trypanosomatid mitochondria: In search of the editosome.

Authors:  Daren Osato; Kestrel Rogers; Qiang Guo; Feng Li; Greg Richmond; Felix Klug; Larry Simpson
Journal:  RNA       Date:  2009-05-15       Impact factor: 4.942

Review 10.  U-Insertion/Deletion mRNA-Editing Holoenzyme: Definition in Sight.

Authors:  Inna Aphasizheva; Ruslan Aphasizhev
Journal:  Trends Parasitol       Date:  2015-11-10
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