Literature DB >> 18582974

Application of systems biology for bioprocess development.

Jin Hwan Park1, Sang Yup Lee, Tae Yong Kim, Hyun Uk Kim.   

Abstract

Random mutagenesis or genetic modification of an organism without consideration of its consequences to the entire system might cause unwanted changes in cellular metabolism. Systems metabolic engineering thus aims to develop strains by performing metabolic engineering within a systems biology framework, in which entire cellular networks are optimized and fermentation and downstream processes are considered at early stages. Thus, regulatory, metabolic and other cellular networks are engineered in an integrated manner. Here, we review the applications of systems biology for the development of strains and bioprocesses by means of several successful examples and, furthermore, discuss future prospects.

Mesh:

Year:  2008        PMID: 18582974     DOI: 10.1016/j.tibtech.2008.05.001

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  35 in total

1.  Can bacteria save the planet?

Authors:  Philip Hunter
Journal:  EMBO Rep       Date:  2010-04       Impact factor: 8.807

2.  Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae.

Authors:  Shihui Yang; Miriam L Land; Dawn M Klingeman; Dale A Pelletier; Tse-Yuan S Lu; Stanton L Martin; Hao-Bo Guo; Jeremy C Smith; Steven D Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-19       Impact factor: 11.205

Review 3.  Systems metabolic engineering: genome-scale models and beyond.

Authors:  John Blazeck; Hal Alper
Journal:  Biotechnol J       Date:  2010-07       Impact factor: 4.677

4.  Production host selection for asymmetric styrene epoxidation: Escherichia coli vs. solvent-tolerant Pseudomonas.

Authors:  Daniel Kuhn; Bruno Bühler; Andreas Schmid
Journal:  J Ind Microbiol Biotechnol       Date:  2012-04-17       Impact factor: 3.346

5.  Differential proteomic analysis highlights metabolic strategies associated with balhimycin production in Amycolatopsis balhimycina chemostat cultivations.

Authors:  Giuseppe Gallo; Rosa Alduina; Giovanni Renzone; Jette Thykaer; Linda Bianco; Anna Eliasson-Lantz; Andrea Scaloni; Anna Maria Puglia
Journal:  Microb Cell Fact       Date:  2010-11-26       Impact factor: 5.328

6.  Enhanced display of lipase on the Escherichia coli cell surface, based on transcriptome analysis.

Authors:  Jong Hwan Baek; Mee-Jung Han; Seung Hwan Lee; Sang Yup Lee
Journal:  Appl Environ Microbiol       Date:  2009-11-30       Impact factor: 4.792

7.  Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli.

Authors:  Adam M Feist; Daniel C Zielinski; Jeffrey D Orth; Jan Schellenberger; Markus J Herrgard; Bernhard Ø Palsson
Journal:  Metab Eng       Date:  2009-10-17       Impact factor: 9.783

8.  Increased malonyl coenzyme A biosynthesis by tuning the Escherichia coli metabolic network and its application to flavanone production.

Authors:  Zachary L Fowler; William W Gikandi; Mattheos A G Koffas
Journal:  Appl Environ Microbiol       Date:  2009-07-24       Impact factor: 4.792

Review 9.  Genome-scale models of bacterial metabolism: reconstruction and applications.

Authors:  Maxime Durot; Pierre-Yves Bourguignon; Vincent Schachter
Journal:  FEMS Microbiol Rev       Date:  2008-12-03       Impact factor: 16.408

Review 10.  Toward engineering synthetic microbial metabolism.

Authors:  George H McArthur; Stephen S Fong
Journal:  J Biomed Biotechnol       Date:  2009-12-14
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