Literature DB >> 18579769

Identification of the TFII-I family target genes in the vertebrate genome.

Nyam-Osor Chimge1, Aleksandr V Makeyev, Frank H Ruddle, Dashzeveg Bayarsaihan.   

Abstract

GTF2I and GTF2IRD1 encode members of the TFII-I transcription factor family and are prime candidates in the Williams syndrome, a complex neurodevelopmental disorder. Our previous expression microarray studies implicated TFII-I proteins in the regulation of a number of genes critical in various aspects of cell physiology. Here, we combined bioinformatics and microarray results to identify TFII-I downstream targets in the vertebrate genome. These results were validated by chromatin immunoprecipitation and siRNA analysis. The collected evidence revealed the complexity of TFII-I-mediated processes that involve distinct regulatory networks. Altogether, these results lead to a better understanding of specific molecular events, some of which may be responsible for the Williams syndrome phenotype.

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Year:  2008        PMID: 18579769      PMCID: PMC2449355          DOI: 10.1073/pnas.0803051105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  DAVID: Database for Annotation, Visualization, and Integrated Discovery.

Authors:  Glynn Dennis; Brad T Sherman; Douglas A Hosack; Jun Yang; Wei Gao; H Clifford Lane; Richard A Lempicki
Journal:  Genome Biol       Date:  2003-04-03       Impact factor: 13.583

3.  Shroom induces apical constriction and is required for hingepoint formation during neural tube closure.

Authors:  Saori L Haigo; Jeffrey D Hildebrand; Richard M Harland; John B Wallingford
Journal:  Curr Biol       Date:  2003-12-16       Impact factor: 10.834

Review 4.  Signal-induced functions of the transcription factor TFII-I.

Authors:  Ananda L Roy
Journal:  Biochim Biophys Acta       Date:  2007-10-11

5.  Genomic organization of the genes Gtf2ird1, Gtf2i, and Ncf1 at the mouse chromosome 5 region syntenic to the human chromosome 7q11.23 Williams syndrome critical region.

Authors:  Dashzeveg Bayarsaihan; Judit Dunai; John M Greally; Kazuhiko Kawasaki; Kenta Sumiyama; Badam Enkhmandakh; Nobuyoshi Shimizu; Frank H Ruddle
Journal:  Genomics       Date:  2002-01       Impact factor: 5.736

6.  Characterization of general transcription factor 3, a transcription factor involved in slow muscle-specific gene expression.

Authors:  Detlef Vullhorst; Andres Buonanno
Journal:  J Biol Chem       Date:  2002-12-09       Impact factor: 5.157

7.  Shroom, a PDZ domain-containing actin-binding protein, is required for neural tube morphogenesis in mice.

Authors:  J D Hildebrand; P Soriano
Journal:  Cell       Date:  1999-11-24       Impact factor: 41.582

8.  Identifying biological themes within lists of genes with EASE.

Authors:  Douglas A Hosack; Glynn Dennis; Brad T Sherman; H Clifford Lane; Richard A Lempicki
Journal:  Genome Biol       Date:  2003-09-11       Impact factor: 13.583

9.  Williams syndrome deficits in visual spatial processing linked to GTF2IRD1 and GTF2I on chromosome 7q11.23.

Authors:  Hamao Hirota; Rumiko Matsuoka; Xiao-Ning Chen; Lora S Salandanan; Alan Lincoln; Fredric E Rose; Mariko Sunahara; Makiko Osawa; Ursula Bellugi; Julie R Korenberg
Journal:  Genet Med       Date:  2003 Jul-Aug       Impact factor: 8.822

10.  hMusTRD1alpha1 represses MEF2 activation of the troponin I slow enhancer.

Authors:  Patsie Polly; Leila M Haddadi; Laura L Issa; Nanthakumar Subramaniam; Stephen J Palmer; Enoch S E Tay; Edna C Hardeman
Journal:  J Biol Chem       Date:  2003-07-10       Impact factor: 5.157

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  18 in total

1.  An atypical 7q11.23 deletion in a normal IQ Williams-Beuren syndrome patient.

Authors:  Giovanni Battista Ferrero; Cédric Howald; Lucia Micale; Elisa Biamino; Bartolomeo Augello; Carmela Fusco; Maria Giuseppina Turturo; Serena Forzano; Alexandre Reymond; Giuseppe Merla
Journal:  Eur J Hum Genet       Date:  2010-01       Impact factor: 4.246

Review 2.  Biochemistry and biology of the inducible multifunctional transcription factor TFII-I: 10 years later.

Authors:  Ananda L Roy
Journal:  Gene       Date:  2011-10-21       Impact factor: 3.688

Review 3.  The contribution of GTF2I haploinsufficiency to Williams syndrome.

Authors:  Thanathom Chailangkarn; Chalongrat Noree; Alysson R Muotri
Journal:  Mol Cell Probes       Date:  2018-01-03       Impact factor: 2.365

4.  An In Vivo Gain-of-Function Screen Identifies the Williams-Beuren Syndrome Gene GTF2IRD1 as a Mammary Tumor Promoter.

Authors:  Yongliang Huo; Timothy Su; Qiuyin Cai; Ian G Macara
Journal:  Cell Rep       Date:  2016-05-26       Impact factor: 9.423

5.  Repression of Adipose Tissue Fibrosis through a PRDM16-GTF2IRD1 Complex Improves Systemic Glucose Homeostasis.

Authors:  Yutaka Hasegawa; Kenji Ikeda; Yong Chen; Diana L Alba; Daniel Stifler; Kosaku Shinoda; Takashi Hosono; Pema Maretich; Yangyu Yang; Yasushi Ishigaki; Jingyi Chi; Paul Cohen; Suneil K Koliwad; Shingo Kajimura
Journal:  Cell Metab       Date:  2018-01-09       Impact factor: 27.287

6.  An SNP in an ultraconserved regulatory element affects Dlx5/Dlx6 regulation in the forebrain.

Authors:  Luc Poitras; Man Yu; Cindy Lesage-Pelletier; Ryan B Macdonald; Jean-Philippe Gagné; Gary Hatch; Isabelle Kelly; Steven P Hamilton; John L R Rubenstein; Guy G Poirier; Marc Ekker
Journal:  Development       Date:  2010-08-11       Impact factor: 6.868

7.  Identification of additional loci associated with antibody response to Mycobacterium avium ssp. Paratuberculosis in cattle by GSEA-SNP analysis.

Authors:  Marcello Del Corvo; Mario Luini; Alessandra Stella; Giulio Pagnacco; Paolo Ajmone-Marsan; John L Williams; Giulietta Minozzi
Journal:  Mamm Genome       Date:  2017-09-01       Impact factor: 2.957

8.  Evolution of general transcription factors.

Authors:  K V Gunbin; A Ruvinsky
Journal:  J Mol Evol       Date:  2012-12-11       Impact factor: 2.395

9.  Diversity and complexity in chromatin recognition by TFII-I transcription factors in pluripotent embryonic stem cells and embryonic tissues.

Authors:  Aleksandr V Makeyev; Badam Enkhmandakh; Seung-Hyun Hong; Pujan Joshi; Dong-Guk Shin; Dashzeveg Bayarsaihan
Journal:  PLoS One       Date:  2012-09-10       Impact factor: 3.240

10.  A role for transcription factor GTF2IRD2 in executive function in Williams-Beuren syndrome.

Authors:  Melanie A Porter; Carol Dobson-Stone; John B J Kwok; Peter R Schofield; William Beckett; May Tassabehji
Journal:  PLoS One       Date:  2012-10-31       Impact factor: 3.240

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