Literature DB >> 18573070

The search for folding intermediates and the mechanism of protein folding.

Robert L Baldwin1.   

Abstract

My research began with theory and methods for ultracentrifugal studies of proteins, first at the University of Wisconsin, Madison, with Bob Alberty and Jack Williams, then at Oxford University with A.G. ("Sandy") Ogston, and finally back at Wisconsin with Williams and Lou Gosting. In 1959 I joined Arthur Kornberg's Biochemistry Department at Stanford University. Our first work was physical studies of DNA replication and then DNA physical chemistry, and DNA studies ended with the energetics of DNA twisting. In 1971 we began to search for protein folding intermediates by fast-reaction methods. We found the slow-folding and fast-folding forms of unfolded ribonuclease A, which led to the understanding that proline isomerization is sometimes part of the folding process. Using hydrogen exchange as a probe, we found the rapid formation of secondary structure during folding and used this to provide an NMR pulse labeling method for determining structures of folding intermediates. Our studies of peptide helices provided basic helix-coil parameters, also evidence for hierarchic folding, and further indicated that peptide hydrogen bonds are important in the energetics of folding.

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Year:  2008        PMID: 18573070     DOI: 10.1146/annurev.biophys.37.032807.125948

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  24 in total

1.  Characterization of deamidation of barstar using electrospray ionization quadrupole time-of-flight mass spectrometry, which stabilizes an equilibrium unfolding intermediate.

Authors:  Santosh Kumar Jha; Putchen Dakshinamoorthy Deepalakshmi; Jayant B Udgaonkar
Journal:  Protein Sci       Date:  2012-03-16       Impact factor: 6.725

Review 2.  Structural determinants of protein folding.

Authors:  Tse Siang Kang; R Manjunatha Kini
Journal:  Cell Mol Life Sci       Date:  2009-04-15       Impact factor: 9.261

3.  A reexamination of correlations of amino acids with particular secondary structures.

Authors:  Sasa N Malkov; Miodrag V Zivković; Milos V Beljanski; Srdan D Stojanović; Snezana D Zarić
Journal:  Protein J       Date:  2009-02       Impact factor: 2.371

4.  Structure and stability of the C-terminal helical bundle of the E. coli mechanosensitive channel of large conductance.

Authors:  Troy A Walton; Douglas C Rees
Journal:  Protein Sci       Date:  2013-09-30       Impact factor: 6.725

Review 5.  The Mechanism and Function of Group II Chaperonins.

Authors:  Tom Lopez; Kevin Dalton; Judith Frydman
Journal:  J Mol Biol       Date:  2015-04-30       Impact factor: 5.469

6.  Effect of short- and long-range interactions on trp rotamer populations determined by site-directed tryptophan fluorescence of tear lipocalin.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  PLoS One       Date:  2013-10-28       Impact factor: 3.240

7.  "Wet" Versus "Dry" Folding of Polyproline.

Authors:  Liuqing Shi; Alison E Holliday; Brian C Bohrer; Doyong Kim; Kelly A Servage; David H Russell; David E Clemmer
Journal:  J Am Soc Mass Spectrom       Date:  2016-04-08       Impact factor: 3.109

8.  Conserved core of amyloid fibrils of wild type and A30P mutant α-synuclein.

Authors:  Min-Kyu Cho; Hai-Young Kim; Claudio O Fernandez; Stefan Becker; Markus Zweckstetter
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

Review 9.  The nature of protein folding pathways.

Authors:  S Walter Englander; Leland Mayne
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-17       Impact factor: 11.205

Review 10.  Application and use of differential scanning calorimetry in studies of thermal fluctuation associated with amyloid fibril formation.

Authors:  Kenji Sasahara; Yuji Goto
Journal:  Biophys Rev       Date:  2012-11-13
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