| Literature DB >> 18567894 |
Marina Grigorova1, Margus Punab, Kristo Ausmees, Maris Laan.
Abstract
BACKGROUND: No polymorphisms affecting serum FSH levels have been described in the human FSHB gene. We have identified a potential regulatory single nucleotide polymorphism (SNP, rs10835638; G/T) 211 bp upstream from the FSHB mRNA transcription start-site, located within a highly conserved region among placental mammals. We aimed to determine the correlation of carrier status of rs10835638 alternative alleles with serum FSH level in men, and testicular and hormonal parameters.Entities:
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Year: 2008 PMID: 18567894 PMCID: PMC2517155 DOI: 10.1093/humrep/den216
Source DB: PubMed Journal: Hum Reprod ISSN: 0268-1161 Impact factor: 6.918
Figure 1:Location of rs10835638 (G/T) (a) within the human FSHB genomic region and (b) on the comparative alignment of the conserved 5′ upstream sequence element shown to act as PRE in ovine Fshb promoter (Webster ).
Black and white boxes indicate coding and non-coding exons E1–E3, respectively. The location of the rs10835638 (position −211) and the PRE element (from −212 to −197) is shown relative to transcription start-site of the human FSHB gene. The ovine PRE element (Webster ) is indicated on the alignment as the boxed sequence and the nucleotide G corresponding to the position of the human polymorphism G/T is highlighted with larger font. Ovis aries, domestic sheep; Homo sapiens, human; Macaca mulatta, rhesus monkey; Mus musculus, house mouse; Canis lupus, dog; Dasypus novemcinctus, Nine-banded Armadillo.
Characteristics of the study subjects grouped by rs10835638 (variant in human FSHB promoter) genotype.
| GG ( | GT ( | TT ( | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Regression testinga | ANOVAa | Mann–Whitney | ||||||||
| Mean (SD) | Median (5–95) | Mean (SD) | Median (5–95) | Mean (SD) | Median (5–95) | Allele effect | Genotype effect | TT versus GG | TT+GT versus GG | |
| Age (years) | 19.23 (1.73) | 18.68 (17.24–22.78) | 19.11 (1.68) | 18.65 (17.18–22.57) | 20.16 (2.56) | 19.56 (17.88–23.43) | 8.34 × 10−1 | 2.87 × 10−1 | 5.11 × 10−1 | 5.14 × 10−1 |
| Abstinence period (h) | 111.1 (52.07) | 94 (58–206) | 124.5 (60.95) | 112 (58.3–225.7) | 124.67 (77.99) | 97.5 (67–240.25) | 7.88 × 10−1 | |||
| Height (cm) | 180.74 (6.73) | 180 (170.1–192) | 180.06 (6.92) | 181 (168.3–191) | 178.17 (9.58) | 174.5 (170–191.5) | 4.40 × 10−1 | 5.25 × 10−1 | 7.72 × 10−1 | 4.84 × 10−1 |
| Weight (kg) | 73 (11.14) | 72 (60–90) | 72.54 (10.65) | 72 (60–90) | 75.5 (11.84) | 73.5 (63.75–90.25) | 8.69 × 10−1 | 8.15 × 10−1 | 7.33 × 10−1 | 7.46 × 10−1 |
| BMI | 22.33 (3.1) | 22.02 (18.81–27.44) | 22.37 (3.06) | 21.91 (18.57–27.58) | 23.66 (1.81) | 23.57 (21.82–25.99) | 6.87 × 10−1 | 5.75 × 10−1 | 9.63 × 10−1 | |
| FSH (IU/l) | 3.37 (1.79) | 2.98 (1.29–6.74) | 2.84 (1.54) | 2.46 (1.14–5.4) | 2.02 (0.81) | 2.06 (1.06–2.91) | ||||
| Inhibin-B (pg/ml) | 246.04 (79.44) | 239 (130.2–389.6) | 234.79 (79.32) | 227 (115.9–368.7) | 234.5 (94.35) | 223 (134.3–352.0) | 2.51 × 10−1 | 5.08 × 10−1 | 7.00 × 10−1 | 2.42 × 10−1 |
| LH (IU/l) | 4.08 (1.74) | 3.81 (1.84–7.32) | 4.08 (1.71) | 3.85 (1.73–7.48) | 4.68 (1.45) | 4.88 (2.76–6.15) | 8.67 × 10−1 | 6.84 × 10−1 | 2.52 × 10−1 | 8.31 × 10−1 |
| Testosterone (nmol/l) | 29.62 (9.08) | 28.4 (16.91–45.59) | 27.55 (9.29) | 25.2 (14.2–45.57) | 27.9 (4.00) | 29.1 (22.08–31.28) | 7.54 × 10−1 | |||
| Estradiol (pmol/l) | 102.84 (26) | 99 (68–145) | 97.55 (24.81) | 92 (64.3–141.4) | 122.67 (26.28) | 115.5 (96–157.25) | 2.49 × 10−1 | |||
| SHBG (nmol/l) | 34.2 (12.78) | 32 (18–55.9) | 34.25 (16.46) | 32 (18–51) | 45.5 (13.84) | 44 (30–63.75) | 3.94 × 10−1 | 1.22 × 10−1 | 8.74 × 10−1 | |
| Free testosterone index | 93.8 (35) | 88.78 (50.36–150.48) | 86.88 (30.16) | 84 (45.93–139.1) | 66.45 (25.15) | 62.02 (44.48–102.21) | ||||
| Total Testes volume (ml) | 50.59 (10.17) | 50 (36–70) | 50.07 (9.83) | 50 (35–69.1) | 39.33 (12.94) | 43 (22–52.5) | 2.07 × 10−1 | 6.24 × 10−1 | ||
| Semen volume (ml) | 3.4 (1.6) | 3.2 (1.2–6.3) | 3.43 (1.57) | 3.3 (1.2–6.04) | 4.93 (2.14) | 5.7 (1.88–6.73) | 1.90 × 10−1 | 3.68 × 10−1 | ||
| Sperm conc (106/ml) | 87.41 (77.14) | 70 (7–219.9) | 83.39 (83.54) | 62 (10.3–225.7) | 57.17 (41.98) | 48.5 (13.75–109.25) | 4.97 × 10−1 | 6.21 × 10−1 | 3.55 × 10−1 | 3.68 × 10−1 |
| A+B motility (%) | 55.86 (13.19) | 57 (32.1–75) | 57.34 (11.72) | 58.5 (41–76.75) | 59.33 (9.33) | 61 (48–69) | 1.92 × 10−1 | 4.26 × 10−1 | 5.80 × 10−1 | 3.54 × 10−1 |
aRegression testing for a linear trend of marker alleles and one-way analysis of variance (ANOVA; tests for all traits df = 1) for genotype–trait associations were performed with the following covariates: age and BMI (all analysis), abstinence time (seminal parameters).
bMann–Whitney U-test (two-tailed) testing the difference between the medians and distributions of the study parameters for two subgroups.
Significant difference has been highlighted: , < 0.05, .
SHBG: sex hormone-binding globulin.
Figure 2:Boxblots for the distribution of (a) serum FSH, (b) free androgen index, (c) Inhibin-B, (d) LH, (e) combined testicular volume (left + right), (f) sperm concentration, (g) testosterone and (h) estradiol in study subjects subgrouped according to their FSHB promoter SNP rs10835638 genotype, either as GG (n = 423), GT (n = 125) or TT (n = 6) individuals.
The boxes represent the 25th and 75th percentiles; whiskers are lines extending from each end of the box covering the extent of the data on 1.5× inter-quartile range. The median value is denoted as the line that bisects the boxes. Circles represent the outlier values. For each boxplot are shown P-values of Marker–Parameter association analysis: one-way ANOVA and regression testing for a linear trend.