Literature DB >> 18560163

Estimated H-atom anisotropic displacement parameters: a comparison between different methods and with neutron diffraction results.

Parthapratim Munshi1, Anders Ø Madsen, Mark A Spackman, Sine Larsen, Riccardo Destro.   

Abstract

Anisotropic displacement parameters (ADPs) are compared for H atoms estimated using three recently described procedures, both among themselves and with neutron diffraction results. The results convincingly demonstrate that all methods are capable of giving excellent results for several benchmark systems and identify systematic discrepancies for several atom types. A revised and extended library of internal H-atom mean-square displacements is presented for use with Madsen's SHADE web server [J. Appl. Cryst. (2006), 39, 757-758; http://shade.ki.ku.dk], and the improvement over the original SHADE results is substantial, suggesting that this is now the most readily and widely applicable of the three approximate procedures. Using this new library--SHADE2--it is shown that, in line with expectations, a segmented rigid-body description of the heavy atoms yields only a small improvement in the agreement with neutron results. The SHADE2 library, now incorporated in the SHADE web server, is recommended as a routine procedure for deriving estimates of H-atom ADPs suitable for use in charge-density studies on molecular crystals, and its widespread use should reveal remaining deficiencies and perhaps overcome the inherent bias in the majority of such studies.

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Year:  2008        PMID: 18560163     DOI: 10.1107/S010876730801341X

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  9 in total

1.  Experimental Electron Density and Neutron Diffraction Studies on the Polymorphs of Sulfathiazole.

Authors:  Ioana Sovago; Matthias J Gutmann; J Grant Hill; Hans Martin Senn; Lynne H Thomas; Chick C Wilson; Louis J Farrugia
Journal:  Cryst Growth Des       Date:  2014-01-17       Impact factor: 4.076

2.  On the temperature dependence of H-U(iso) in the riding hydrogen model.

Authors:  Jens Lübben; Christian Volkmann; Simon Grabowsky; Alison Edwards; Wolfgang Morgenroth; Francesca P A Fabbiani; George M Sheldrick; Birger Dittrich
Journal:  Acta Crystallogr A Found Adv       Date:  2014-05-28       Impact factor: 2.290

3.  Hydrogen atoms can be located accurately and precisely by x-ray crystallography.

Authors:  Magdalena Woińska; Simon Grabowsky; Paulina M Dominiak; Krzysztof Woźniak; Dylan Jayatilaka
Journal:  Sci Adv       Date:  2016-05-27       Impact factor: 14.136

4.  Accurate Bond Lengths to Hydrogen Atoms from Single-Crystal X-ray Diffraction by Including Estimated Hydrogen ADPs and Comparison to Neutron and QM/MM Benchmarks.

Authors:  Birger Dittrich; Jens Lübben; Stefan Mebs; Armin Wagner; Peter Luger; Ralf Flaig
Journal:  Chemistry       Date:  2017-03-15       Impact factor: 5.236

5.  Topological properties of hydrogen bonds and covalent bonds from charge densities obtained by the maximum entropy method (MEM).

Authors:  Jeanette Netzel; Sander van Smaalen
Journal:  Acta Crystallogr B       Date:  2009-08-28

6.  Estimating temperature-dependent anisotropic hydrogen displacements with the invariom database and a new segmented rigid-body analysis program.

Authors:  Jens Lübben; Luc J Bourhis; Birger Dittrich
Journal:  J Appl Crystallogr       Date:  2015-11-10       Impact factor: 3.304

7.  Crystal landscape in the orcinol:4,4'-bipyridine system: synthon modularity, polymorphism and transferability of multipole charge density parameters.

Authors:  Ritesh Dubey; Mysore S Pavan; Tayur N Guru Row; Gautam R Desiraju
Journal:  IUCrJ       Date:  2013-10-01       Impact factor: 4.769

Review 8.  Contributions of charge-density research to medicinal chemistry.

Authors:  Birger Dittrich; Chérif F Matta
Journal:  IUCrJ       Date:  2014-09-23       Impact factor: 4.769

9.  Exploring the simultaneous σ-hole/π-hole bonding characteristics of a Br⋯π interaction in an ebselen derivative via experimental and theoretical electron-density analysis.

Authors:  Rahul Shukla; Nicolas Claiser; Mohamed Souhassou; Claude Lecomte; Shah Jaimin Balkrishna; Sangit Kumar; Deepak Chopra
Journal:  IUCrJ       Date:  2018-09-01       Impact factor: 4.769

  9 in total

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