Literature DB >> 18560123

A roadmap for caGrid, an enterprise Grid architecture for biomedical research.

Joel Saltz1, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin Kurc, Philip Payne, Renato Ferreira, Beth Plale, Carole Goble, David Ervin, Ashish Sharma, Tony Pan, Justin Permar, Peter Brezany, Frank Siebenlist, Ravi Madduri, Ian Foster, Krishnakant Shanbhag, Charlie Mead, Neil Chue Hong.   

Abstract

caGrid is a middleware system which combines the Grid computing, the service oriented architecture, and the model driven architecture paradigms to support development of interoperable data and analytical resources and federation of such resources in a Grid environment. The functionality provided by caGrid is an essential and integral component of the cancer Biomedical Informatics Grid (caBIG) program. This program is established by the National Cancer Institute as a nationwide effort to develop enabling informatics technologies for collaborative, multi-institutional biomedical research with the overarching goal of accelerating translational cancer research. Although the main application domain for caGrid is cancer research, the infrastructure provides a generic framework that can be employed in other biomedical research and healthcare domains. The development of caGrid is an ongoing effort, adding new functionality and improvements based on feedback and use cases from the community. This paper provides an overview of potential future architecture and tooling directions and areas of improvement for caGrid and caGrid-like systems. This summary is based on discussions at a roadmap workshop held in February with participants from biomedical research, Grid computing, and high performance computing communities.

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Year:  2008        PMID: 18560123      PMCID: PMC3292259     

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  7 in total

1.  caCORE: a common infrastructure for cancer informatics.

Authors:  Peter A Covitz; Frank Hartel; Carl Schaefer; Sherri De Coronado; Gilberto Fragoso; Himanso Sahni; Scott Gustafson; Kenneth H Buetow
Journal:  Bioinformatics       Date:  2003-12-12       Impact factor: 6.937

2.  caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Authors:  Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi Madduri; Joshua Phillips; Tahsin Kurc; Frank Siebenlist; Peter Covitz; Krishnakant Shanbhag; Ian Foster; Joel Saltz
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

3.  caGrid 1.0: a Grid enterprise architecture for cancer research.

Authors:  Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi Madduri; Tahsin Kurc; Frank Siebenlist; Peter Covitz; Krishnakant Shanbhag; Ian Foster; Joel Saltz
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

4.  caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid.

Authors:  Joel Saltz; Scott Oster; Shannon Hastings; Stephen Langella; Tahsin Kurc; William Sanchez; Manav Kher; Arumani Manisundaram; Krishnakant Shanbhag; Peter Covitz
Journal:  Bioinformatics       Date:  2006-06-09       Impact factor: 6.937

5.  The Cancer Biomedical Informatics Grid (caBIG) Security Infrastructure.

Authors:  Stephen Langella; Scott Oster; Shannon Hastings; Frank Siebenlist; Joshua Phillips; David Ervin; Justin Permar; Tahsin Kurc; Joel Saltz
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

6.  The caCORE Software Development Kit: streamlining construction of interoperable biomedical information services.

Authors:  Joshua Phillips; Ram Chilukuri; Gilberto Fragoso; Denise Warzel; Peter A Covitz
Journal:  BMC Med Inform Decis Mak       Date:  2006-01-06       Impact factor: 2.796

7.  Taverna: a tool for building and running workflows of services.

Authors:  Duncan Hull; Katy Wolstencroft; Robert Stevens; Carole Goble; Mathew R Pocock; Peter Li; Tom Oinn
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

  7 in total
  5 in total

1.  Automated database mediation using ontological metadata mappings.

Authors:  Luis Marenco; Rixin Wang; Prakash Nadkarni
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

2.  HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH.

Authors:  Tahsin Kurc; Shannon Hastings; Vijay Kumar; Stephen Langella; Ashish Sharma; Tony Pan; Scott Oster; David Ervin; Justin Permar; Sivaramakrishnan Narayanan; Yolanda Gil; Ewa Deelman; Mary Hall; Joel Saltz
Journal:  Int J High Perform Comput Appl       Date:  2009-08-01       Impact factor: 1.942

3.  Virtualization of open-source secure web services to support data exchange in a pediatric critical care research network.

Authors:  Lewis J Frey; Katherine A Sward; Christopher J L Newth; Robinder G Khemani; Martin E Cryer; Julie L Thelen; Rene Enriquez; Su Shaoyu; Murray M Pollack; Rick E Harrison; Kathleen L Meert; Robert A Berg; David L Wessel; Thomas P Shanley; Heidi Dalton; Joseph Carcillo; Tammara L Jenkins; J Michael Dean
Journal:  J Am Med Inform Assoc       Date:  2015-03-21       Impact factor: 4.497

4.  Adoption and Adaptation of caGrid for CTSA.

Authors:  Shannon Hastings; Scott Oster; Stephen Langella; Calixto Melean; Tara Borlawsky; Rakesh Dhavel; Philip Payne
Journal:  Summit Transl Bioinform       Date:  2009-03-01

5.  Sustainability Through Technology Licensing and Commercialization: Lessons Learned from the TRIAD Project.

Authors:  Philip R O Payne
Journal:  EGEMS (Wash DC)       Date:  2014-07-17
  5 in total

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