Literature DB >> 18554175

Zinc finger-based knockout punches for zebrafish genes.

Stephen C Ekker1.   

Abstract

The ability to manipulate the genome is critical to develop and test hypotheses based on genetics. Knockdown strategies focused on RNAi and/or morpholinos are excellent genetic tools, but they come with substantial technical limitations. A new gene targeting approach employing synthetic zinc finger nuclease (ZFN) technology is a powerful and complementary approach to directly modify genetic loci for many diverse applications, notably enhancing Danio rerio (the zebrafish) as an experimental organism for understanding human disease. This ZFN-based technology to generate targeted knockouts in this aquatic animal opens the door to an array of new biological models of human disease and genetic testing.

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Year:  2008        PMID: 18554175      PMCID: PMC2849655          DOI: 10.1089/zeb.2008.9988

Source DB:  PubMed          Journal:  Zebrafish        ISSN: 1545-8547            Impact factor:   1.985


  4 in total

1.  Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.

Authors:  David A Wright; Stacey Thibodeau-Beganny; Jeffry D Sander; Ronnie J Winfrey; Andrew S Hirsh; Magdalena Eichtinger; Fengli Fu; Matthew H Porteus; Drena Dobbs; Daniel F Voytas; J Keith Joung
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

2.  Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases.

Authors:  Xiangdong Meng; Marcus B Noyes; Lihua J Zhu; Nathan D Lawson; Scot A Wolfe
Journal:  Nat Biotechnol       Date:  2008-05-25       Impact factor: 54.908

Review 3.  Gene targeting using zinc finger nucleases.

Authors:  Matthew H Porteus; Dana Carroll
Journal:  Nat Biotechnol       Date:  2005-08       Impact factor: 54.908

4.  Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.

Authors:  Yannick Doyon; Jasmine M McCammon; Jeffrey C Miller; Farhoud Faraji; Catherine Ngo; George E Katibah; Rainier Amora; Toby D Hocking; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Sharon L Amacher
Journal:  Nat Biotechnol       Date:  2008-05-25       Impact factor: 54.908

  4 in total
  28 in total

Review 1.  Modeling human neurodegenerative diseases in transgenic systems.

Authors:  Miguel A Gama Sosa; Rita De Gasperi; Gregory A Elder
Journal:  Hum Genet       Date:  2011-12-14       Impact factor: 4.132

2.  Rats!

Authors:  Philip M Iannaccone; Howard J Jacob
Journal:  Dis Model Mech       Date:  2009 May-Jun       Impact factor: 5.758

Review 3.  Zebrafish models of human liver development and disease.

Authors:  Benjamin J Wilkins; Michael Pack
Journal:  Compr Physiol       Date:  2013-07       Impact factor: 9.090

Review 4.  Investigating the genetics of visual processing, function and behaviour in zebrafish.

Authors:  Sabine L Renninger; Helia B Schonthaler; Stephan C F Neuhauss; Ralf Dahm
Journal:  Neurogenetics       Date:  2011-01-26       Impact factor: 2.660

Review 5.  Swimming into prominence: the zebrafish as a valuable tool for studying human myopathies and muscular dystrophies.

Authors:  Elizabeth M Gibbs; Eric J Horstick; James J Dowling
Journal:  FEBS J       Date:  2013-07-25       Impact factor: 5.542

6.  Manipulating galectin expression in zebrafish (Danio rerio).

Authors:  Chiguang Feng; Mihai Nita-Lazar; Nuria González-Montalbán; Jingyu Wang; Justin Mancini; Chinnarajan Ravindran; Hafiz Ahmed; Gerardo R Vasta
Journal:  Methods Mol Biol       Date:  2015

7.  Zinc fingers poke zebrafish, cause thrombosis!

Authors:  Pudur Jagadeeswaran
Journal:  Blood       Date:  2014-07-03       Impact factor: 22.113

Review 8.  Genetic and environmental melanoma models in fish.

Authors:  E Elizabeth Patton; David L Mitchell; Rodney S Nairn
Journal:  Pigment Cell Melanoma Res       Date:  2010-03-08       Impact factor: 4.693

9.  Differentiation of zebrafish melanophores depends on transcription factors AP2 alpha and AP2 epsilon.

Authors:  Eric Van Otterloo; Wei Li; Gregory Bonde; Kristopher M Day; Mei-Yu Hsu; Robert A Cornell
Journal:  PLoS Genet       Date:  2010-09-16       Impact factor: 5.917

Review 10.  Adult zebrafish as a model organism for behavioural genetics.

Authors:  William Norton; Laure Bally-Cuif
Journal:  BMC Neurosci       Date:  2010-08-02       Impact factor: 3.288

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