Literature DB >> 18550842

The fold of alpha-synuclein fibrils.

Marçal Vilar1, Hui-Ting Chou, Thorsten Lührs, Samir K Maji, Dominique Riek-Loher, Rene Verel, Gerard Manning, Henning Stahlberg, Roland Riek.   

Abstract

The aggregation of proteins into amyloid fibrils is associated with several neurodegenerative diseases. In Parkinson's disease it is believed that the aggregation of alpha-synuclein (alpha-syn) from monomers by intermediates into amyloid fibrils is the toxic disease-causative mechanism. Here, we studied the structure of alpha-syn in its amyloid state by using various biophysical approaches. Quenched hydrogen/deuterium exchange NMR spectroscopy identified five beta-strands within the fibril core comprising residues 35-96 and solid-state NMR data from amyloid fibrils comprising the fibril core residues 30-110 confirmed the presence of beta-sheet secondary structure. The data suggest that beta1-strand interacts with beta2, beta2 with beta3, beta3 with beta4, and beta4 with beta5. High-resolution cryoelectron microscopy revealed the protofilament boundaries of approximately 2 x 3.5 nm. Based on the combination of these data and published structural studies, a fold of alpha-syn in the fibrils is proposed and discussed.

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Year:  2008        PMID: 18550842      PMCID: PMC2438424          DOI: 10.1073/pnas.0712179105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  Structural organization of alpha-synuclein fibrils studied by site-directed spin labeling.

Authors:  Ani Der-Sarkissian; Christine C Jao; Jeannie Chen; Ralf Langen
Journal:  J Biol Chem       Date:  2003-06-18       Impact factor: 5.157

2.  A general model for amyloid fibril assembly based on morphological studies using atomic force microscopy.

Authors:  Ritu Khurana; Cristian Ionescu-Zanetti; Maighdlin Pope; Jie Li; Liza Nielson; Marina Ramírez-Alvarado; Lynn Regan; Anthony L Fink; Sue A Carter
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

3.  Polarization-transfer methods in solid-state magic-angle-spinning NMR: adiabatic CN pulse sequences.

Authors:  René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2004-06-21       Impact factor: 3.102

Review 4.  Structural models of amyloid-like fibrils.

Authors:  Rebecca Nelson; David Eisenberg
Journal:  Adv Protein Chem       Date:  2006

5.  Structure and dynamics of micelle-bound human alpha-synuclein.

Authors:  Tobias S Ulmer; Ad Bax; Nelson B Cole; Robert L Nussbaum
Journal:  J Biol Chem       Date:  2004-12-22       Impact factor: 5.157

6.  Correlation of structural elements and infectivity of the HET-s prion.

Authors:  Christiane Ritter; Marie-Lise Maddelein; Ansgar B Siemer; Thorsten Lührs; Matthias Ernst; Beat H Meier; Sven J Saupe; Roland Riek
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

7.  Investigation of alpha-synuclein fibril structure by site-directed spin labeling.

Authors:  Min Chen; Martin Margittai; Jeannie Chen; Ralf Langen
Journal:  J Biol Chem       Date:  2007-06-15       Impact factor: 5.157

Review 8.  Alpha-synuclein and Parkinson's disease.

Authors:  Alessandra Recchia; Patrizia Debetto; Alessandro Negro; Diego Guidolin; Stephen D Skaper; Pietro Giusti
Journal:  FASEB J       Date:  2004-04       Impact factor: 5.191

9.  General structural motifs of amyloid protofilaments.

Authors:  Neil Ferguson; Johanna Becker; Henning Tidow; Sandra Tremmel; Timothy D Sharpe; Gerd Krause; Jeremy Flinders; Miriana Petrovich; John Berriman; Hartmut Oschkinat; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

Review 10.  The synucleins.

Authors:  Julia M George
Journal:  Genome Biol       Date:  2001-12-20       Impact factor: 13.583

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  199 in total

1.  Semisynthetic, site-specific ubiquitin modification of α-synuclein reveals differential effects on aggregation.

Authors:  Franziska Meier; Tharindumala Abeywardana; Abhinav Dhall; Nicholas P Marotta; Jobin Varkey; Ralf Langen; Champak Chatterjee; Matthew R Pratt
Journal:  J Am Chem Soc       Date:  2012-03-14       Impact factor: 15.419

2.  Evidence for copper-dioxygen reactivity during alpha-synuclein fibril formation.

Authors:  Heather R Lucas; Serena Debeer; Myoung-Soon Hong; Jennifer C Lee
Journal:  J Am Chem Soc       Date:  2010-05-19       Impact factor: 15.419

3.  Characterizing the assembly of the Sup35 yeast prion fragment, GNNQQNY: structural changes accompany a fiber-to-crystal switch.

Authors:  Karen E Marshall; Matthew R Hicks; Thomas L Williams; Søren Vrønning Hoffmann; Alison Rodger; Timothy R Dafforn; Louise C Serpell
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

4.  Design and Optimization of Anti-amyloid Domain Antibodies Specific for β-Amyloid and Islet Amyloid Polypeptide.

Authors:  Christine C Lee; Mark C Julian; Kathryn E Tiller; Fanling Meng; Sarah E DuConge; Rehana Akter; Daniel P Raleigh; Peter M Tessier
Journal:  J Biol Chem       Date:  2015-11-24       Impact factor: 5.157

5.  Comparison of strategies for non-perturbing labeling of α-synuclein to study amyloidogenesis.

Authors:  Conor M Haney; Rebecca F Wissner; John B Warner; Yanxin J Wang; John J Ferrie; Dustin J Covell; Richard J Karpowicz; Virginia M-Y Lee; E James Petersson
Journal:  Org Biomol Chem       Date:  2016-02-07       Impact factor: 3.876

6.  Transient β-hairpin formation in α-synuclein monomer revealed by coarse-grained molecular dynamics simulation.

Authors:  Hang Yu; Wei Han; Wen Ma; Klaus Schulten
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

7.  Coupling of the non-amyloid-component (NAC) domain and the KTK(E/Q)GV repeats stabilize the α-synuclein fibrils.

Authors:  Liang Xu; Ruth Nussinov; Buyong Ma
Journal:  Eur J Med Chem       Date:  2016-01-25       Impact factor: 6.514

8.  NMR determination of pKa values in α-synuclein.

Authors:  Robyn L Croke; Sharadrao M Patil; Jason Quevreaux; Debra A Kendall; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2010-12-13       Impact factor: 6.725

9.  A pH-dependent switch promotes β-synuclein fibril formation via glutamate residues.

Authors:  Gina M Moriarty; Michael P Olson; Tamr B Atieh; Maria K Janowska; Sagar D Khare; Jean Baum
Journal:  J Biol Chem       Date:  2017-07-14       Impact factor: 5.157

10.  Glial α-synuclein promotes neurodegeneration characterized by a distinct transcriptional program in vivo.

Authors:  Abby L Olsen; Mel B Feany
Journal:  Glia       Date:  2019-07-03       Impact factor: 7.452

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