Literature DB >> 18550738

Loop-mediated isothermal amplification assay for rapid detection of common strains of Escherichia coli.

Joshua Hill1, Shilpa Beriwal, Ishwad Chandra, Vinod K Paul, Aarti Kapil, Tripti Singh, Robert M Wadowsky, Vinita Singh, Ankur Goyal, Timo Jahnukainen, James R Johnson, Phillip I Tarr, Abhay Vats.   

Abstract

We developed a highly sensitive and specific LAMP assay for Escherichia coli. It does not require DNA extraction and can detect as few as 10 copies. It detected all 36 of 36 E. coli isolates and all 22 urine samples (out of 89 samples tested) that had E. coli. This assay is rapid, low in cost, and simple to perform.

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Year:  2008        PMID： 18550738      PMCID： PMC2519505          DOI： 10.1128/JCM.00152-08

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  22 in total

1.  Accelerated reaction by loop-mediated isothermal amplification using loop primers.

Authors:  K Nagamine; T Hase; T Notomi
Journal:  Mol Cell Probes       Date:  2002-06       Impact factor: 2.365

Review 2.  Bugs and the gut: an unstable marriage.

Authors:  Michael J G Farthing
Journal:  Best Pract Res Clin Gastroenterol       Date:  2004-04       Impact factor: 3.043

3.  Inhibitory effects of urine on the polymerase chain reaction for cytomegalovirus DNA.

Authors:  G Khan; H O Kangro; P J Coates; R B Heath
Journal:  J Clin Pathol       Date:  1991-05       Impact factor: 3.411

Review 4.  Diarrhoeagenic Escherichia coli--an emerging problem?

Authors:  S C Clarke
Journal:  Diagn Microbiol Infect Dis       Date:  2001-11       Impact factor: 2.803

5.  Standard reference strains of Escherichia coli from natural populations.

Authors:  H Ochman; R K Selander
Journal:  J Bacteriol       Date:  1984-02       Impact factor: 3.490

6.  Sensitive and rapid detection of Vero toxin-producing Escherichia coli using loop-mediated isothermal amplification.

Authors:  Yukiko Hara-Kudo; Jiro Nemoto; Kayoko Ohtsuka; Yuko Segawa; Kosuke Takatori; Tadashi Kojima; Masanari Ikedo
Journal:  J Med Microbiol       Date:  2007-03       Impact factor: 2.472

Review 7.  Medical and economic impact of extraintestinal infections due to Escherichia coli: focus on an increasingly important endemic problem.

Authors:  Thomas A Russo; James R Johnson
Journal:  Microbes Infect       Date:  2003-04       Impact factor: 2.700

Review 8.  Microbial virulence determinants and the pathogenesis of urinary tract infection.

Authors:  James R Johnson
Journal:  Infect Dis Clin North Am       Date:  2003-06       Impact factor: 5.982

9.  Escherichia coli O157:H7 Shiga toxin-encoding bacteriophages: integrations, excisions, truncations, and evolutionary implications.

Authors:  Nurmohammad Shaikh; Phillip I Tarr
Journal:  J Bacteriol       Date:  2003-06       Impact factor: 3.490

10.  Application of loop-mediated isothermal amplification technique to rapid and direct detection of methicillin-resistant Staphylococcus aureus (MRSA) in blood cultures.

Authors:  Yoshiki Misawa; Atsushi Yoshida; Ryoichi Saito; Honami Yoshida; Katsuko Okuzumi; Nobue Ito; Mitsumasa Okada; Kyoji Moriya; Kazuhiko Koike
Journal:  J Infect Chemother       Date:  2007-06-21       Impact factor: 2.211
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  73 in total

1.  Implications of direct amplification for measuring antimicrobial resistance using point-of-care devices.

Authors:  M R Williams; R D Stedtfeld; H Waseem; T Stedtfeld; B Upham; W Khalife; B Etchebarne; M Hughes; J M Tiedje; S A Hashsham
Journal:  Anal Methods       Date:  2017-01-31       Impact factor: 2.896

2.  Isothermal Detection of Mycoplasma pneumoniae Directly from Respiratory Clinical Specimens.

Authors:  Brianna L Petrone; Bernard J Wolff; Alexandra A DeLaney; Maureen H Diaz; Jonas M Winchell
Journal:  J Clin Microbiol       Date:  2015-07-15       Impact factor: 5.948

3.  Visual detection of norovirus genogroup II by reverse transcription loop-mediated isothermal amplification with hydroxynaphthol blue dye.

Authors:  Jianming Luo; Ziqian Xu; Kai Nie; Xiong Ding; Li Guan; Ji Wang; Yuying Xian; Xiyang Wu; Xuejun Ma
Journal:  Food Environ Virol       Date:  2014-04-22       Impact factor: 2.778

Review 4.  Loop Mediated Isothermal Amplification: A Promising Tool for Screening Genetic Mutations.

Authors:  Arjuna Srividya; Biswajit Maiti; Anirban Chakraborty; Gunimala Chakraborty
Journal:  Mol Diagn Ther       Date:  2019-12       Impact factor: 4.074

5.  Emerging Loop-Mediated Isothermal Amplification-Based Microchip and Microdevice Technologies for Nucleic Acid Detection.

Authors:  Mohammadali Safavieh; Manoj K Kanakasabapathy; Farhang Tarlan; Minhaz U Ahmed; Mohammed Zourob; Waseem Asghar; Hadi Shafiee
Journal:  ACS Biomater Sci Eng       Date:  2016-01-21

6.  Loop-mediated isothermal amplification assays for detecting shiga toxin-producing Escherichia coli in ground beef and human stools.

Authors:  Fei Wang; Lin Jiang; Beilei Ge
Journal:  J Clin Microbiol       Date:  2011-10-26       Impact factor: 5.948

Review 7.  Interfacing Pathogen Detection with Smartphones for Point-of-Care Applications.

Authors:  Xiong Ding; Michael G Mauk; Kun Yin; Karteek Kadimisetty; Changchun Liu
Journal:  Anal Chem       Date:  2018-12-03       Impact factor: 6.986

8.  Development of a panel of recombinase polymerase amplification assays for detection of common bacterial urinary tract infection pathogens.

Authors:  B Raja; H J Goux; A Marapadaga; S Rajagopalan; K Kourentzi; R C Willson
Journal:  J Appl Microbiol       Date:  2017-08       Impact factor: 3.772

9.  On-Site Molecular Detection of Soil-Borne Phytopathogens Using a Portable Real-Time PCR System.

Authors:  Joseph B DeShields; Rachel A Bomberger; James W Woodhall; David L Wheeler; Natalia Moroz; Dennis A Johnson; Kiwamu Tanaka
Journal:  J Vis Exp       Date:  2018-02-23       Impact factor: 1.355

10.  Development of a loop-mediated isothermal amplification assay for sensitive and rapid detection of the tdh and trh genes of Vibrio parahaemolyticus and related Vibrio species.

Authors:  Wataru Yamazaki; Yuko Kumeda; Naoaki Misawa; Yoshitsugu Nakaguchi; Mitsuaki Nishibuchi
Journal:  Appl Environ Microbiol       Date:  2009-12-04       Impact factor: 4.792
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