Literature DB >> 18543897

Multireference ab initio quantum mechanics/molecular mechanics study on intermediates in the catalytic cycle of cytochrome P450(cam).

Ahmet Altun1, Devesh Kumar, Frank Neese, Walter Thiel.   

Abstract

We have investigated the elusive reactive species of cytochrome P450(cam) (Compound I), the hydroxo complex formed during camphor hydroxylation, and the ferric hydroperoxo complex (Compound 0) by combined quantum mechanical/molecular mechanical (QM/MM) calculations, employing both density functional theory (DFT) and correlated ab initio methods. The first two intermediates appear multiconfigurational in character, especially in the doublet state and less so in the quartet state. DFT(B3LYP)/MM calculations reproduce the relative energies from correlated ab initio QM/MM treatments quite well, except for the splitting of the lowest A(1u)-A(2u) radical states. The inclusion of dynamic correlation is crucial for the proper ab initio treatment of these intermediates.

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Year:  2008        PMID: 18543897     DOI: 10.1021/jp802092w

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  6 in total

1.  Elucidating the role of the proximal cysteine hydrogen-bonding network in ferric cytochrome P450cam and corresponding mutants using magnetic circular dichroism spectroscopy.

Authors:  Mary Grace I Galinato; Tatyana Spolitak; David P Ballou; Nicolai Lehnert
Journal:  Biochemistry       Date:  2011-01-21       Impact factor: 3.162

2.  Quantum mechanically derived AMBER-compatible heme parameters for various states of the cytochrome P450 catalytic cycle.

Authors:  Kiumars Shahrokh; Anita Orendt; Garold S Yost; Thomas E Cheatham
Journal:  J Comput Chem       Date:  2011-10-14       Impact factor: 3.376

3.  Color tuning in short wavelength-sensitive human and mouse visual pigments: ab initio quantum mechanics/molecular mechanics studies.

Authors:  Ahmet Altun; Shozo Yokoyama; Keiji Morokuma
Journal:  J Phys Chem A       Date:  2009-10-29       Impact factor: 2.781

4.  Mechanism of spectral tuning going from retinal in vacuo to bovine rhodopsin and its mutants: multireference ab initio quantum mechanics/molecular mechanics studies.

Authors:  Ahmet Altun; Shozo Yokoyama; Keiji Morokuma
Journal:  J Phys Chem B       Date:  2008-12-25       Impact factor: 2.991

5.  Reliably assessing the electronic structure of cytochrome P450 on today's classical computers and tomorrow's quantum computers.

Authors:  Joshua J Goings; Alec White; Joonho Lee; Christofer S Tautermann; Matthias Degroote; Craig Gidney; Toru Shiozaki; Ryan Babbush; Nicholas C Rubin
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-12       Impact factor: 12.779

Review 6.  Applications of density functional theory to iron-containing molecules of bioinorganic interest.

Authors:  Hajime Hirao; Nandun Thellamurege; Xi Zhang
Journal:  Front Chem       Date:  2014-04-29       Impact factor: 5.221

  6 in total

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