Literature DB >> 18542925

Genetic tools for Sulfolobus spp.: vectors and first applications.

Silvia Berkner1, Georg Lipps.   

Abstract

Sulfolobus species belong to the best-studied archaeal organisms but have lacked powerful genetic methods. Recently, there has been considerable progress in the field of Sulfolobus genetics. Urgently needed basic genetic tools, such as targeted gene knockout techniques and shuttle vectors are being developed at an increasing pace. For S. solfataricus knockout systems as well as different shuttle vectors are available. For the genetically more stable S. acidocaldarius shuttle vectors have been recently developed. In this review we summarize the currently available genetic tools and methods for the genus Sulfolobus. Different transformation protocols are discussed, as well as all so far developed knockout systems and Sulfolobus-Escherichia coli shuttle vectors are summarized. Special emphasis is put on the important vector components, i.e., selectable markers and Sulfolobus replicons. Additionally, the information gathered on different Sulfolobus strains with respect to their use as recipient strains is reviewed. The advantages and disadvantages of the different systems are discussed and aims for further improvement of genetic systems are identified.

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Year:  2008        PMID: 18542925     DOI: 10.1007/s00203-008-0392-4

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  14 in total

1.  Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases.

Authors:  Gina L Lipscomb; Karen Stirrett; Gerrit J Schut; Fei Yang; Francis E Jenney; Robert A Scott; Michael W W Adams; Janet Westpheling
Journal:  Appl Environ Microbiol       Date:  2011-02-11       Impact factor: 4.792

2.  Augmenting the genetic toolbox for Sulfolobus islandicus with a stringent positive selectable marker for agmatine prototrophy.

Authors:  Changyi Zhang; Tara E Cooper; David J Krause; Rachel J Whitaker
Journal:  Appl Environ Microbiol       Date:  2013-07-08       Impact factor: 4.792

3.  Polysaccharide-degrading thermophiles generated by heterologous gene expression in Geobacillus kaustophilus HTA426.

Authors:  Hirokazu Suzuki; Ken-ichi Yoshida; Toshihisa Ohshima
Journal:  Appl Environ Microbiol       Date:  2013-06-21       Impact factor: 4.792

4.  Inducible and constitutive promoters for genetic systems in Sulfolobus acidocaldarius.

Authors:  Silvia Berkner; Alexander Wlodkowski; Sonja-Verena Albers; Georg Lipps
Journal:  Extremophiles       Date:  2010-03-12       Impact factor: 2.395

5.  Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii.

Authors:  Thorsten Allers; Shahar Barak; Susan Liddell; Kayleigh Wardell; Moshe Mevarech
Journal:  Appl Environ Microbiol       Date:  2010-01-22       Impact factor: 4.792

6.  Identification and characterization of MalA in the maltose/maltodextrin operon of Sulfolobus acidocaldarius DSM639.

Authors:  Kyoung-Hwa Choi; Sungmin Hwang; Jaeho Cha
Journal:  J Bacteriol       Date:  2013-02-08       Impact factor: 3.490

7.  Nanobody(R)-based chromatin immunoprecipitation/micro-array analysis for genome-wide identification of transcription factor DNA binding sites.

Authors:  Trong Nguyen-Duc; Eveline Peeters; Serge Muyldermans; Daniel Charlier; Gholamreza Hassanzadeh-Ghassabeh
Journal:  Nucleic Acids Res       Date:  2012-12-28       Impact factor: 16.971

8.  Towards a systems approach in the genetic analysis of archaea: Accelerating mutant construction and phenotypic analysis in Haloferax volcanii.

Authors:  Ian K Blaby; Gabriela Phillips; Crysten E Blaby-Haas; Kevin S Gulig; Basma El Yacoubi; Valérie de Crécy-Lagard
Journal:  Archaea       Date:  2010-12-23       Impact factor: 3.273

Review 9.  Genetic tool development underpins recent advances in thermophilic whole-cell biocatalysts.

Authors:  M P Taylor; L van Zyl; I M Tuffin; D J Leak; D A Cowan
Journal:  Microb Biotechnol       Date:  2011-02-10       Impact factor: 5.813

10.  Overview of the genetic tools in the Archaea.

Authors:  Haruyuki Atomi; Tadayuki Imanaka; Toshiaki Fukui
Journal:  Front Microbiol       Date:  2012-10-02       Impact factor: 5.640

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