Literature DB >> 18539838

Estimation of variance components and prediction of breeding values using pooled data.

F Biscarini1, H Bovenhuis, J A M van Arendonk.   

Abstract

Data on performance of animals are, in several situations, collected at the group rather than individual level. Genetic evaluations in farm animals, however, are based on phenotypic information collected at the individual level. Therefore, it would be very attractive to extend genetic evaluations by incorporating information collected at the group level. In this paper we show the use of data collected at the group level for the estimation of variance components and the prediction of breeding values. We outline a general procedure that can be applied in different farm animal species. In the present work this procedure was applied to BW, for which pooled, as well as individual, observations were available, thus allowing for a comparison of the estimates, and to egg production, for which only pooled data were available. For BW at 19 and 27 wk the estimated heritabilities based on individual observations were very similar to those based on pooled observations. For BW at 43 and 51 wk, heritability estimates based on individual and pooled data were different, which can be caused by the emergence of competition effects. The accuracy of EBV predicted from pooled observations was about 70 to 80% of the accuracy of EBV predicted from individual observations. This result quantifies the loss deriving from the use of pooled instead of individual observations. Results show that estimation of variance components and breeding values from pooled data instead of individual observations is theoretically and practically feasible.

Mesh:

Year:  2008        PMID: 18539838     DOI: 10.2527/jas.2007-0757

Source DB:  PubMed          Journal:  J Anim Sci        ISSN: 0021-8812            Impact factor:   3.159


  5 in total

1.  Using egg production longitudinal recording to study the genetic background of resilience in purebred and crossbred laying hens.

Authors:  Nicolas Bedere; Tom V L Berghof; Katrijn Peeters; Marie-Hélène Pinard-van der Laan; Jeroen Visscher; Ingrid David; Han A Mulder
Journal:  Genet Sel Evol       Date:  2022-04-20       Impact factor: 5.100

2.  Using pooled data to estimate variance components and breeding values for traits affected by social interactions.

Authors:  Katrijn Peeters; Esther Dorien Ellen; Piter Bijma
Journal:  Genet Sel Evol       Date:  2013-07-26       Impact factor: 4.297

3.  Optimized grouping to increase accuracy of prediction of breeding values based on group records in genomic selection breeding programs.

Authors:  Thinh T Chu; John W M Bastiaansen; Peer Berg; Hans Komen
Journal:  Genet Sel Evol       Date:  2019-11-15       Impact factor: 4.297

4.  Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait.

Authors:  Xiang Ma; Ole F Christensen; Hongding Gao; Ruihua Huang; Bjarne Nielsen; Per Madsen; Just Jensen; Tage Ostersen; Pinghua Li; Mahmoud Shirali; Guosheng Su
Journal:  Heredity (Edinb)       Date:  2020-07-14       Impact factor: 3.821

5.  Estimation of variance components and prediction of breeding values based on group records from varying group sizes.

Authors:  Guosheng Su; Per Madsen; Bjarne Nielsen; Tage Ostersen; Mahmoud Shirali; Just Jensen; Ole F Christensen
Journal:  Genet Sel Evol       Date:  2018-08-14       Impact factor: 4.297

  5 in total

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