Literature DB >> 18538793

The conditioned reconstructed process.

Tanja Gernhard1.   

Abstract

We investigate a neutral model for speciation and extinction, the constant rate birth-death process. The process is conditioned to have n extant species today, we look at the tree distribution of the reconstructed trees--i.e. the trees without the extinct species. Whereas the tree shape distribution is well-known and actually the same as under the pure birth process, no analytic results for the speciation times were known. We provide the distribution for the speciation times and calculate the expectations analytically. This characterizes the reconstructed trees completely. We will show how the results can be used to date phylogenies.

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Year:  2008        PMID: 18538793     DOI: 10.1016/j.jtbi.2008.04.005

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  194 in total

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Authors:  Tracy A Heath; Mark T Holder; John P Huelsenbeck
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3.  A hierarchical Bayesian model for calibrating estimates of species divergence times.

Authors:  Tracy A Heath
Journal:  Syst Biol       Date:  2012-02-14       Impact factor: 15.683

4.  Inferring speciation and extinction processes from extant species data.

Authors:  Tanja Stadler
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-19       Impact factor: 11.205

5.  Calculations for multi-type age-dependent binary branching processes.

Authors:  Graham Jones
Journal:  J Math Biol       Date:  2010-08-27       Impact factor: 2.259

6.  Elucidating geological and biological processes underlying the diversification of Sulawesi tarsiers.

Authors:  Stefan Merker; Christine Driller; Dyah Perwitasari-Farajallah; Joko Pamungkas; Hans Zischler
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-18       Impact factor: 11.205

7.  Diversification rates have declined in the Malagasy herpetofauna.

Authors:  Daniel P Scantlebury
Journal:  Proc Biol Sci       Date:  2013-09-07       Impact factor: 5.349

8.  Corolla morphology influences diversification rates in bifid toadflaxes (Linaria sect. Versicolores).

Authors:  Mario Fernández-Mazuecos; José Luis Blanco-Pastor; José M Gómez; Pablo Vargas
Journal:  Ann Bot       Date:  2013-10-18       Impact factor: 4.357

9.  Molecular analysis of Spiophanes bombyx complex (Annelida: Spionidae) with description of a new species.

Authors:  Vasily I Radashevsky; Victoria V Pankova; Vasily V Malyar; Tatyana V Neretina; Jin-Woo Choi; Seungshic Yum; Céline Houbin
Journal:  PLoS One       Date:  2020-07-01       Impact factor: 3.240

10.  Stochastic properties of generalised Yule models, with biodiversity applications.

Authors:  Tanja Gernhard; Klaas Hartmann; Mike Steel
Journal:  J Math Biol       Date:  2008-05-29       Impact factor: 2.259

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