Literature DB >> 18538754

Hydrolysis of nerve agents by model nucleophiles: a computational study.

Jeremy M Beck1, Christopher M Hadad.   

Abstract

Density functional theory calculations were employed to study the reaction of five nerve agents with model nucleophiles, including EtX(-) and EtXH (X=O, S, Se) for serine, cysteine and selenocysteine, respectively. Calculations at the B3LYP/6-311++G(2d,p) level of theory predict an exothermic reaction between ethoxide and all of the nerve agents studied. As compared to EtO(-) as a nucleophile, these reactions become approximately 30 kcal/mol more endothermic for EtS(-), and by approximately 40 kcal/mol for EtSe(-). The equivalent reactions with the neutral nucleophiles (EtXH) were more endothermic. The effect of solvation on the reaction thermochemistry was determined using a polarizable continuum model simulating the dielectric constant of chloroform. While there was a large exothermic shift for reactions involving charged nucleophiles with solvation modeling, the corresponding shift was minimal for the reaction with neutral nucleophiles.

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Year:  2008        PMID: 18538754      PMCID: PMC2572228          DOI: 10.1016/j.cbi.2008.04.026

Source DB:  PubMed          Journal:  Chem Biol Interact        ISSN: 0009-2797            Impact factor:   5.192


  9 in total

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Authors:  J L Sussman; M Harel; F Frolow; C Oefner; A Goldman; L Toker; I Silman
Journal:  Science       Date:  1991-08-23       Impact factor: 47.728

2.  Quantum mechanical continuum solvation models.

Authors:  Jacopo Tomasi; Benedetta Mennucci; Roberto Cammi
Journal:  Chem Rev       Date:  2005-08       Impact factor: 60.622

Review 3.  Selenocysteine in proteins-properties and biotechnological use.

Authors:  Linda Johansson; Guro Gafvelin; Elias S J Arnér
Journal:  Biochim Biophys Acta       Date:  2005-06-01

4.  An evaluation of harmonic vibrational frequency scale factors.

Authors:  Jeffrey P Merrick; Damian Moran; Leo Radom
Journal:  J Phys Chem A       Date:  2007-10-19       Impact factor: 2.781

5.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

6.  Evaluation of oxime efficacy in nerve agent poisoning: development of a kinetic-based dynamic model.

Authors:  Franz Worek; Ladislaus Szinicz; Peter Eyer; Horst Thiermann
Journal:  Toxicol Appl Pharmacol       Date:  2005-12-15       Impact factor: 4.219

7.  Ageing and dealkylation of Soman (pinacolylmethylphosphonofluoridate)-inactivated eel cholinesterase.

Authors:  H O Michel; B E Hackley; L Berkowitz; G List; E B Hackley; W Gillilan; M Pankau
Journal:  Arch Biochem Biophys       Date:  1967-07       Impact factor: 4.013

8.  High apparent dielectric constants in the interior of a protein reflect water penetration.

Authors:  J J Dwyer; A G Gittis; D A Karp; E E Lattman; D S Spencer; W E Stites; B García-Moreno E
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

9.  Ab initio molecular orbital and density functional studies on the solvolysis of sarin and O,S-dimethyl methylphosphonothiolate, a VX-like compound.

Authors:  Jolita Seckute; Jessica L Menke; Ryan J Emnett; Eric V Patterson; Christopher J Cramer
Journal:  J Org Chem       Date:  2005-10-28       Impact factor: 4.354

  9 in total
  1 in total

1.  Assessing the reactivation efficacy of hydroxylamine anion towards VX-inhibited AChE: a computational study.

Authors:  Md Abdul Shafeeuulla Khan; Bishwajit Ganguly
Journal:  J Mol Model       Date:  2011-08-18       Impact factor: 1.810

  1 in total

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