Literature DB >> 18537427

Motional narrowing in the time-averaging approximation for simulating two-dimensional nonlinear infrared spectra.

Thomas la Cour Jansen1, Wioletta M Ruszel.   

Abstract

The diagonal linewidth in two-dimensional infrared spectra is often narrower than the distribution of transition frequencies. The width along the antidiagonal is broader than predicted by the lifetime broadening. These effects arise from time-dependent fluctuations of the transition frequencies. They can be accounted for with a semiclassical approach. For systems with many coupled vibrational modes, this approach, however, becomes computationally too demanding to be practically applicable. A time-averaging approximation was suggested for linear infrared absorption spectra. In this paper, we demonstrate that the averaging can be optimized to fit a broader scale of frequency fluctuations by using a Gaussian weight function instead of the originally proposed box function. We further generalize the time-averaging method to allow the simulation of two-dimensional infrared spectra and demonstrate the method on a simple system. The approximation delivers a large speed-up of the calculation without losing significant accuracy.

Year:  2008        PMID: 18537427     DOI: 10.1063/1.2931941

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Coherent infrared multidimensional spectra of the OH stretching band in liquid water simulated by direct nonlinear exciton propagation.

Authors:  Cyril Falvo; Benoit Palmieri; Shaul Mukamel
Journal:  J Chem Phys       Date:  2009-05-14       Impact factor: 3.488

2.  Strategies for extracting structural information from 2D IR spectroscopy of amyloid: application to islet amyloid polypeptide.

Authors:  David B Strasfeld; Yun L Ling; Ruchi Gupta; Daniel P Raleigh; Martin T Zanni
Journal:  J Phys Chem B       Date:  2009-11-26       Impact factor: 2.991

3.  Sensitivity of 2D IR spectra to peptide helicity: a concerted experimental and simulation study of an octapeptide.

Authors:  Neelanjana Sengupta; Hiroaki Maekawa; Wei Zhuang; Claudio Toniolo; Shaul Mukamel; Douglas J Tobias; Nien-Hui Ge
Journal:  J Phys Chem B       Date:  2009-09-03       Impact factor: 2.991

4.  Conformation-specific detection of calmodulin binding using the unnatural amino acid p-azido-phenylalanine (AzF) as an IR-sensor.

Authors:  Anne Creon; Inokentijs Josts; Stephan Niebling; Nils Huse; Henning Tidow
Journal:  Struct Dyn       Date:  2018-11-07       Impact factor: 2.920

Review 5.  Folding mechanism of β-hairpin trpzip2: heterogeneity, transition state and folding pathways.

Authors:  Yi Xiao; Changjun Chen; Yi He
Journal:  Int J Mol Sci       Date:  2009-06-22       Impact factor: 6.208

  5 in total

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