Literature DB >> 18537409

A general statistical test for correlations in a finite-length time series.

Jeffery A Hanson1, Haw Yang.   

Abstract

The statistical properties of the autocorrelation function from a time series composed of independently and identically distributed stochastic variables has been studied. Analytical expressions for the autocorrelation function's variance have been derived. It has been found that two common ways of calculating the autocorrelation, moving-average and Fourier transform, exhibit different uncertainty characteristics. For periodic time series, the Fourier transform method is preferred because it gives smaller uncertainties that are uniform through all time lags. Based on these analytical results, a statistically robust method has been proposed to test the existence of correlations in a time series. The statistical test is verified by computer simulations and an application to single-molecule fluorescence spectroscopy is discussed.

Mesh:

Year:  2008        PMID: 18537409      PMCID: PMC2671173          DOI: 10.1063/1.2931943

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

Review 1.  Branching out of single-molecule fluorescence spectroscopy: challenges for chemistry and influence on biology.

Authors:  Philip Tinnefeld; Markus Sauer
Journal:  Angew Chem Int Ed Engl       Date:  2005-04-29       Impact factor: 15.336

2.  Statistical evaluation of single nano-object fluorescence.

Authors:  Markus Lippitz; Florian Kulzer; Michel Orrit
Journal:  Chemphyschem       Date:  2005-05       Impact factor: 3.102

Review 3.  Single-molecule fluorescence studies of protein folding and conformational dynamics.

Authors:  Xavier Michalet; Shimon Weiss; Marcus Jäger
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

4.  Effect of finite trajectory length on the correlation function analysis of single molecule data.

Authors:  Chun-Yaung Lu; David A Vanden Bout
Journal:  J Chem Phys       Date:  2006-09-28       Impact factor: 3.488

5.  Illuminating the mechanistic roles of enzyme conformational dynamics.

Authors:  Jeffrey A Hanson; Karl Duderstadt; Lucas P Watkins; Sucharita Bhattacharyya; Jason Brokaw; Jhih-Wei Chu; Haw Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-07       Impact factor: 11.205

6.  New directions in single-molecule imaging and analysis.

Authors:  W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-30       Impact factor: 11.205

7.  COCIS: Markov processes in single molecule fluorescence.

Authors:  David S Talaga
Journal:  Curr Opin Colloid Interface Sci       Date:  2007-12-01       Impact factor: 6.448

8.  Quantitative single-molecule conformational distributions: a case study with poly-(L-proline).

Authors:  Lucas P Watkins; Hauyee Chang; Haw Yang
Journal:  J Phys Chem A       Date:  2006-04-20       Impact factor: 2.781

  8 in total
  5 in total

1.  Structural distributions from single-molecule measurements as a tool for molecular mechanics.

Authors:  Jeffrey A Hanson; Jason Brokaw; Carl C Hayden; Jhih-Wei Chu; Haw Yang
Journal:  Chem Phys       Date:  2011-06-22       Impact factor: 2.348

2.  Conformational dynamics of single G protein-coupled receptors in solution.

Authors:  Samuel Bockenhauer; Alexandre Fürstenberg; Xiao Jie Yao; Brian K Kobilka; W E Moerner
Journal:  J Phys Chem B       Date:  2011-10-21       Impact factor: 2.991

3.  Dynamic active-site protection by the M. tuberculosis protein tyrosine phosphatase PtpB lid domain.

Authors:  E Megan Flynn; Jeffrey A Hanson; Tom Alber; Haw Yang
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

4.  Information-theoretical analysis of time-correlated single-photon counting measurements of single molecules.

Authors:  David S Talaga
Journal:  J Phys Chem A       Date:  2009-04-30       Impact factor: 2.781

5.  Quantitative evaluation of cross correlation between two finite-length time series with applications to single-molecule FRET.

Authors:  Jeffery A Hanson; Haw Yang
Journal:  J Phys Chem B       Date:  2008-10-11       Impact factor: 2.991

  5 in total

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