Literature DB >> 18524562

Boundaries. Boundaries...Boundaries???

Victoria V Lunyak1.   

Abstract

One way to modulate transcription is by partitioning the chromatin fiber within the nucleus into the active or inactive domains through the establishment of higher-order chromatin structure. Such subdivision of chromatin implies the existence of insulators and boundaries that delimit differentially regulated chromosomal loci. Recently published data on transcriptional interference from the repeated component of the genome fits the classic definition of insulator/boundary activity. This review discusses the phenomena of transcriptional interference and raises the question about functionality of genomic "junk" along with the need to stimulate a dialogue on how we would define the insulators and boundaries in the light of contemporary data. Rule 19 (a) (Boundaries)"Before the toss, the umpires shall agree the boundary of the field of play with both captains. The boundary shall, if possible, be marked along its whole length" Rules of Cricket.

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Year:  2008        PMID: 18524562     DOI: 10.1016/j.ceb.2008.03.018

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  19 in total

Review 1.  Minimizing the unpredictability of transgene expression in plants: the role of genetic insulators.

Authors:  Stacy D Singer; Zongrang Liu; Kerik D Cox
Journal:  Plant Cell Rep       Date:  2011-10-11       Impact factor: 4.570

Review 2.  Genomic gems: SINE RNAs regulate mRNA production.

Authors:  Steven L Ponicsan; Jennifer F Kugel; James A Goodrich
Journal:  Curr Opin Genet Dev       Date:  2010-02-20       Impact factor: 5.578

Review 3.  Epigenetics components of aging in the central nervous system.

Authors:  Yue-Qiang Zhao; I King Jordan; Victoria V Lunyak
Journal:  Neurotherapeutics       Date:  2013-10       Impact factor: 7.620

Review 4.  Genomic relationship between SINE retrotransposons, Pol III-Pol II transcription, and chromatin organization: the journey from junk to jewel.

Authors:  Victoria V Lunyak; Michelle Atallah
Journal:  Biochem Cell Biol       Date:  2011-09-14       Impact factor: 3.626

5.  The M4 insulator, the TM2 matrix attachment region, and the double copy of the heavy chain gene contribute to the enhanced accumulation of the PHB-01 antibody in tobacco plants.

Authors:  Yoslaine Ruiz; Pedro Luis Ramos; Jeny Soto; Meilyn Rodríguez; Natacha Carlos; Aneisi Reyes; Danay Callard; Yadira Sánchez; Merardo Pujol; Alejandro Fuentes
Journal:  Transgenic Res       Date:  2020-01-09       Impact factor: 2.788

6.  A boundary element between Tsix and Xist binds the chromatin insulator Ctcf and contributes to initiation of X-chromosome inactivation.

Authors:  Rebecca J Spencer; Brian C del Rosario; Stefan F Pinter; Derek Lessing; Ruslan I Sadreyev; Jeannie T Lee
Journal:  Genetics       Date:  2011-08-11       Impact factor: 4.562

7.  Dioxin receptor and SLUG transcription factors regulate the insulator activity of B1 SINE retrotransposons via an RNA polymerase switch.

Authors:  Angel Carlos Román; Francisco J González-Rico; Eduardo Moltó; Henar Hernando; Ana Neto; Cristina Vicente-Garcia; Esteban Ballestar; José L Gómez-Skarmeta; Jana Vavrova-Anderson; Robert J White; Lluís Montoliu; Pedro M Fernández-Salguero
Journal:  Genome Res       Date:  2011-02-03       Impact factor: 9.043

8.  MIR retrotransposon sequences provide insulators to the human genome.

Authors:  Jianrong Wang; Cristina Vicente-García; Davide Seruggia; Eduardo Moltó; Ana Fernandez-Miñán; Ana Neto; Elbert Lee; José Luis Gómez-Skarmeta; Lluís Montoliu; Victoria V Lunyak; I King Jordan
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

9.  An enhancer-blocking element regulates the cell-specific expression of alcohol dehydrogenase 7.

Authors:  Sowmya Jairam; Howard J Edenberg
Journal:  Gene       Date:  2014-06-24       Impact factor: 3.688

10.  Epigenetic silencing in Friedreich ataxia is associated with depletion of CTCF (CCCTC-binding factor) and antisense transcription.

Authors:  Irene De Biase; Yogesh K Chutake; Paul M Rindler; Sanjay I Bidichandani
Journal:  PLoS One       Date:  2009-11-19       Impact factor: 3.240

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