Literature DB >> 18522923

Body temperature predicts maximum microsatellite length in mammals.

William Amos1, Andrew Clarke.   

Abstract

A long-standing mystery in genome evolution is why short tandem repeats vary so much in length and frequency. Here, we test the hypothesis that body temperature acts to influence the rate and nature of slippage-based mutations. Using the data from both 28 species where genome sequencing is advanced and 76 species from which marker loci have been published, we show that in mammals, maximum repeat number is inversely correlated with body temperature, with warmer-blooded species having shorter 'long' microsatellites. Our results support a model of microsatellite evolution in which maximum length is limited by a temperature-dependent stability threshold.

Mesh:

Year:  2008        PMID: 18522923      PMCID: PMC2610156          DOI: 10.1098/rsbl.2008.0209

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  15 in total

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Authors:  W Amos; S J Sawcer; R W Feakes; D C Rubinsztein
Journal:  Nat Genet       Date:  1996-08       Impact factor: 38.330

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Authors:  A Di Rienzo; A C Peterson; J C Garza; A M Valdes; M Slatkin; N B Freimer
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-12       Impact factor: 11.205

6.  Mechanism of in vitro expansion of long DNA repeats: effect of temperature, repeat length, repeat sequence, and DNA polymerases.

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Journal:  Biochemistry       Date:  2002-01-22       Impact factor: 3.162

7.  Mutation rate varies among alleles at a microsatellite locus: phylogenetic evidence.

Authors:  L Jin; C Macaubas; J Hallmayer; A Kimura; E Mignot
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

8.  Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations.

Authors:  S Kruglyak; R T Durrett; M D Schug; C F Aquadro
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

9.  Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes.

Authors:  Dorothée Huchon; Ole Madsen; Mark J J B Sibbald; Kai Ament; Michael J Stanhope; François Catzeflis; Wilfried W de Jong; Emmanuel J P Douzery
Journal:  Mol Biol Evol       Date:  2002-07       Impact factor: 16.240

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Authors:  J C Garza; M Slatkin; N B Freimer
Journal:  Mol Biol Evol       Date:  1995-07       Impact factor: 16.240

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Authors:  William Amos; Laura N S Filipe
Journal:  PeerJ       Date:  2014-11-06       Impact factor: 2.984

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