Literature DB >> 18522922

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes.

Fabien Burki1, Kamran Shalchian-Tabrizi, Jan Pawlowski.   

Abstract

Advances in molecular phylogeny of eukaryotes have suggested a tree composed of a small number of supergroups. Phylogenomics recently established the relationships between some of these large assemblages, yet the deepest nodes are still unresolved. Here, we investigate early evolution among the major eukaryotic supergroups using the broadest multigene dataset to date (65 species, 135 genes). Our analyses provide strong support for the clustering of plants, chromalveolates, rhizarians, haptophytes and cryptomonads, thus linking nearly all photosynthetic lineages and raising the question of a possible unique origin of plastids. At its deepest level, the tree of eukaryotes now receives strong support for two monophyletic megagroups comprising most of the eukaryotic diversity.

Mesh:

Year:  2008        PMID: 18522922      PMCID: PMC2610160          DOI: 10.1098/rsbl.2008.0224

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  25 in total

1.  A cyanobacterial gene in nonphotosynthetic protists--an early chloroplast acquisition in eukaryotes?

Authors:  Jan O Andersson; Andrew J Roger
Journal:  Curr Biol       Date:  2002-01-22       Impact factor: 10.834

2.  The root of the eukaryote tree pinpointed.

Authors:  Alexandra Stechmann; Thomas Cavalier-Smith
Journal:  Curr Biol       Date:  2003-09-02       Impact factor: 10.834

3.  Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data.

Authors:  Nobuko Arisue; Masami Hasegawa; Tetsuo Hashimoto
Journal:  Mol Biol Evol       Date:  2004-10-20       Impact factor: 16.240

4.  Telonemia, a new protist phylum with affinity to chromist lineages.

Authors:  K Shalchian-Tabrizi; W Eikrem; D Klaveness; D Vaulot; M A Minge; F Le Gall; K Romari; J Throndsen; A Botnen; R Massana; H A Thomsen; K S Jakobsen
Journal:  Proc Biol Sci       Date:  2006-07-22       Impact factor: 5.349

5.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

6.  Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates.

Authors:  Jeremiah D Hackett; Hwan Su Yoon; Shenglan Li; Adrian Reyes-Prieto; Susanne E Rümmele; Debashish Bhattacharya
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

7.  The eukaryotic tree of life: endosymbiosis takes its TOL.

Authors:  Christopher E Lane; John M Archibald
Journal:  Trends Ecol Evol       Date:  2008-04-02       Impact factor: 17.712

8.  Toward resolving the eukaryotic tree: the phylogenetic positions of jakobids and cercozoans.

Authors:  Naiara Rodríguez-Ezpeleta; Henner Brinkmann; Gertraud Burger; Andrew J Roger; Michael W Gray; Hervé Philippe; B Franz Lang
Journal:  Curr Biol       Date:  2007-08-09       Impact factor: 10.834

9.  Centrohelida is still searching for a phylogenetic home: analyses of seven Raphidiophrys contractilis genes.

Authors:  Miako Sakaguchi; Yuji Inagaki; Tetsuo Hashimoto
Journal:  Gene       Date:  2007-09-14       Impact factor: 3.688

10.  TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics.

Authors:  Gangolf Jobb; Arndt von Haeseler; Korbinian Strimmer
Journal:  BMC Evol Biol       Date:  2004-06-28       Impact factor: 3.260

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  99 in total

1.  The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins.

Authors:  Fabien Burki; Noriko Okamoto; Jean-François Pombert; Patrick J Keeling
Journal:  Proc Biol Sci       Date:  2012-02-01       Impact factor: 5.349

Review 2.  Biochemistry and evolution of anaerobic energy metabolism in eukaryotes.

Authors:  Miklós Müller; Marek Mentel; Jaap J van Hellemond; Katrin Henze; Christian Woehle; Sven B Gould; Re-Young Yu; Mark van der Giezen; Aloysius G M Tielens; William F Martin
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

3.  Sequence diversity and novelty of natural assemblages of picoeukaryotes from the Indian Ocean.

Authors:  Ramon Massana; Massimo Pernice; John A Bunge; Javier del Campo
Journal:  ISME J       Date:  2010-07-15       Impact factor: 10.302

4.  Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life.

Authors:  Laura Wegener Parfrey; Jessica Grant; Yonas I Tekle; Erica Lasek-Nesselquist; Hilary G Morrison; Mitchell L Sogin; David J Patterson; Laura A Katz
Journal:  Syst Biol       Date:  2010-07-23       Impact factor: 15.683

Review 5.  After the primary endosymbiosis: an update on the chromalveolate hypothesis and the origins of algae with Chl c.

Authors:  Beverley R Green
Journal:  Photosynth Res       Date:  2010-07-30       Impact factor: 3.573

6.  Optimization of de novo transcriptome assembly from next-generation sequencing data.

Authors:  Yann Surget-Groba; Juan I Montoya-Burgos
Journal:  Genome Res       Date:  2010-08-06       Impact factor: 9.043

Review 7.  The acquisition of phototrophy: adaptive strategies of hosting endosymbionts and organelles.

Authors:  Matthew D Johnson
Journal:  Photosynth Res       Date:  2010-04-20       Impact factor: 3.573

8.  A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids.

Authors:  Jan Janouskovec; Ales Horák; Miroslav Oborník; Julius Lukes; Patrick J Keeling
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

Review 9.  Intermediary metabolism in protists: a sequence-based view of facultative anaerobic metabolism in evolutionarily diverse eukaryotes.

Authors:  Michael L Ginger; Lillian K Fritz-Laylin; Chandler Fulton; W Zacheus Cande; Scott C Dawson
Journal:  Protist       Date:  2010-10-30

10.  Evolution of the eukaryotic ARP2/3 activators of the WASP family: WASP, WAVE, WASH, and WHAMM, and the proposed new family members WAWH and WAML.

Authors:  Martin Kollmar; Dawid Lbik; Stefanie Enge
Journal:  BMC Res Notes       Date:  2012-02-08
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