Literature DB >> 18521537

Molecular characteristics of the tubeworm, Ridgeia piscesae, from the deep-sea hydrothermal vent.

Lingwei Ruan1, Xiaofang Bian, Xin Wang, Xiumin Yan, Fang Li, Xun Xu.   

Abstract

Ridgeia piscesae, living around the extremely harsh hydrothermal vent in deep sea, is an ideal model for studying the adaptative mechanism to extreme environment. For insights of its molecular characteristics, a cDNA library of R. piscesae was constructed. A total of 879 expressed sequence tags (ESTs) were sequenced and 199 genes were identified for the first time. They were found to be involved in basal metabolism, adaptation and defense, or signal transduction. Among them, we found 23 various chitin-binding proteins, which are the major component of the chitinous tube that prevents the tubeworms from predators and surrounding extreme environment. Additionally, high polymorphism also exists in other genes, such as myohemerythrin, lysozyme. The gene-expression profile might help to further understand the molecular basis of tubeworm physiology. It will also lay a good foundation for functional studies on the adaptation to extreme environments.

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Year:  2008        PMID: 18521537     DOI: 10.1007/s00792-008-0172-8

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  19 in total

1.  The O(2) binding pocket of myohemerythrin: role of a conserved leucine.

Authors:  J Xiong; R S Phillips; D M Kurtz; S Jin; J Ai; J Sanders-Loehr
Journal:  Biochemistry       Date:  2000-07-25       Impact factor: 3.162

2.  Expression and localization of carbonic anhydrase and ATPases in the symbiotic tubeworm Riftia pachyptila.

Authors:  Marie-Cécile De Cian; Ann C Andersen; Xavier Bailly; François H Lallier
Journal:  J Exp Biol       Date:  2003-01       Impact factor: 3.312

3.  Molecular evolution and phylogeny of sipunculan hemerythrins.

Authors:  Stefano Vanin; Enrico Negrisolo; Xavier Bailly; Luigi Bubacco; Mariano Beltramini; Benedetto Salvato
Journal:  J Mol Evol       Date:  2005-12-14       Impact factor: 2.395

4.  Tachycitin, a small granular component in horseshoe crab hemocytes, is an antimicrobial protein with chitin-binding activity.

Authors:  S Kawabata; R Nagayama; M Hirata; T Shigenaga; K L Agarwala; T Saito; J Cho; H Nakajima; T Takagi; S Iwanaga
Journal:  J Biochem       Date:  1996-12       Impact factor: 3.387

5.  ON THE EVOLUTION OF PHENOTYPIC PLASTICITY IN A SPATIALLY HETEROGENEOUS ENVIRONMENT.

Authors:  Lev A Zhivotovsky; Marcus W Feldman; Aviv Bergman
Journal:  Evolution       Date:  1996-04       Impact factor: 3.694

6.  Environmental differences in hemoglobin gene expression in the hydrothermal vent tubeworm, Ridgeia piscesae.

Authors:  Susan L Carney; Jason F Flores; Kathryn M Orobona; David A Butterfield; Charles R Fisher; Stephen W Schaeffer
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  2006-11-17       Impact factor: 2.231

Review 7.  What's new in lysozyme research? Always a model system, today as yesterday.

Authors:  P Jollès; J Jollès
Journal:  Mol Cell Biochem       Date:  1984-09       Impact factor: 3.396

8.  The crystal structures of Phascolopsis gouldii wild type and L98Y methemerythrins: structural and functional alterations of the O2 binding pocket.

Authors:  C S Farmer; D M Kurtz; Z J Liu; B C Wang; J Rose; J Ai; J Sanders-Loehr
Journal:  J Biol Inorg Chem       Date:  2001-04       Impact factor: 3.358

9.  Carbon release from purified chemoautotrophic bacterial symbionts of the hydrothermal vent tubeworm Riftia pachyptila.

Authors:  H Felbeck; J Jarchow
Journal:  Physiol Zool       Date:  1998 May-Jun

10.  Chemoautotrophic Potential of the Hydrothermal Vent Tube Worm, Riftia pachyptila Jones (Vestimentifera).

Authors:  H Felbeck
Journal:  Science       Date:  1981-07-17       Impact factor: 47.728

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  2 in total

1.  Expression and putative function of innate immunity genes under in situ conditions in the symbiotic hydrothermal vent tubeworm Ridgeia piscesae.

Authors:  Spencer V Nyholm; Pengfei Song; Jeanne Dang; Corey Bunce; Peter R Girguis
Journal:  PLoS One       Date:  2012-06-11       Impact factor: 3.240

2.  Cloning and Functional Analysis of Pax6 from the Hydrothermal Vent Tubeworm Ridgeia piscesae.

Authors:  Huifang Yuan; Wei Wang; Bin Hu; Changkun Pan; Mingliang Chen; Linlin Ke; Lirong Yang; Jianming Chen
Journal:  PLoS One       Date:  2016-12-22       Impact factor: 3.240

  2 in total

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