Literature DB >> 18521530

Collagen's triglycine repeat number and phylogeny suggest an interdomain transfer event from a Devonian or Silurian organism into Trichodesmium erythraeum.

Bradley E Layton1, Adam J D'Souza, William Dampier, Adam Zeiger, Alia Sabur, Jesula Jean-Charles.   

Abstract

Two competing effects at two vastly different scales may explain collagen's current translation length. The necessity to have long molecules for maintaining mechanical integrity at the organism and supraorganism scales may be limited by the need to have small molecules capable of robust self-assembly at the nanoscale. The triglycine repeat regions of all 556 currently cataloged organisms with collagen-like genes were ranked by length. This revealed a sharp boundary in the GXY transcript number at 1032 amino acids (344 GXY repeats). An anomalous exception, however, is the intron-free Trichodesmium erythraeum collagen gene. Immunogold atomic force microscopy reveals, for the first time, the presence of a collagen-like protein in T. erythraeum. A phylogenetic protein sequence analysis which includes vertebrates, nonvertebrates, shrimp white spot syndrome virus, Streptococcus equi, and Bacillus cereus predicts that the collagen-like sequence may have emerged shortly after the divergence of fibrillar and nonfibrillar collagens. The presence of this anomalously long collagen gene within a prokaryote may represent an interdomain transfer from eukaryotes into prokaryotes that gives T. erythraeum the ability to form blooms that cover hundreds of square kilometers of ocean. We propose that the collagen gene entered the prokaryote intron-free only after it had been molded by years of mechanical selective pressure in larger organisms and only after large, dense food sources such as marine vertebrates became available. This anomalously long collagen-like sequence may explain T. erythraeum's ability to aggregate and thus concentrate its toxin for food-source procurement.

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Year:  2008        PMID: 18521530      PMCID: PMC2443231          DOI: 10.1007/s00239-008-9111-7

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  50 in total

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Authors:  J X Tang; J A Käs; J V Shah; P A Janmey
Journal:  Eur Biophys J       Date:  2001-12       Impact factor: 1.733

2.  Gene transfer: gene swapping craze reaches eukaryotes.

Authors:  J Peter Gogarten
Journal:  Curr Biol       Date:  2003-01-21       Impact factor: 10.834

3.  Steered molecular dynamics studies of titin I1 domain unfolding.

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Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

4.  Direct quantification of the flexibility of type I collagen monomer.

Authors:  Yu-Long Sun; Zong-Ping Luo; Andrzej Fertala; Kai-Nan An
Journal:  Biochem Biophys Res Commun       Date:  2002-07-12       Impact factor: 3.575

5.  Biased biological functions of horizontally transferred genes in prokaryotic genomes.

Authors:  Yoji Nakamura; Takeshi Itoh; Hideo Matsuda; Takashi Gojobori
Journal:  Nat Genet       Date:  2004-06-20       Impact factor: 38.330

6.  TreeRefiner: a tool for refining a multiple alignment on a phylogenetic tree.

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Journal:  Proc IEEE Comput Syst Bioinform Conf       Date:  2005

Review 7.  Collagens at a glance.

Authors:  Karl E Kadler; Clair Baldock; Jordi Bella; Raymond P Boot-Handford
Journal:  J Cell Sci       Date:  2007-06-15       Impact factor: 5.285

8.  A secreted collagen- and fibronectin-binding streptococcal protein modulates cell-mediated collagen gel contraction and interstitial fluid pressure.

Authors:  Asa Lidén; Tijs van Wieringen; Jonas Lannergård; Anja Kassner; Dick Heinegård; Rolf K Reed; Bengt Guss; Kristofer Rubin
Journal:  J Biol Chem       Date:  2007-11-13       Impact factor: 5.157

9.  Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.

Authors:  S Karlin; S F Altschul
Journal:  Proc Natl Acad Sci U S A       Date:  1990-03       Impact factor: 11.205

Review 10.  Molecular evolution before the origin of species.

Authors:  Brian K Davis
Journal:  Prog Biophys Mol Biol       Date:  2002 May-Jul       Impact factor: 3.667

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  3 in total

1.  Ancient origin of the integrin-mediated adhesion and signaling machinery.

Authors:  Arnau Sebé-Pedrós; Andrew J Roger; Franz B Lang; Nicole King; Iñaki Ruiz-Trillo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

2.  Identification of the first prokaryotic collagen sequence motif that mediates binding to human collagen receptors, integrins alpha2beta1 and alpha11beta1.

Authors:  Clayton C Caswell; Malgorzata Barczyk; Douglas R Keene; Ewa Lukomska; Donald E Gullberg; Slawomir Lukomski
Journal:  J Biol Chem       Date:  2008-11-05       Impact factor: 5.157

Review 3.  Trichodesmium--a widespread marine cyanobacterium with unusual nitrogen fixation properties.

Authors:  Birgitta Bergman; Gustaf Sandh; Senjie Lin; John Larsson; Edward J Carpenter
Journal:  FEMS Microbiol Rev       Date:  2012-09-20       Impact factor: 16.408

  3 in total

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