Literature DB >> 18518493

Asymptotic strength limit of hydrogen-bond assemblies in proteins at vanishing pulling rates.

Sinan Keten1, Markus J Buehler.   

Abstract

We develop a fracture-mechanics-based theoretical framework that considers the free energy competition between entropic elasticity of polypeptide chains and rupture of peptide hydrogen bonds, which we use here to provide an explanation for the intrinsic strength limit of protein domains at vanishing rates. Our analysis predicts that individual protein domains stabilized only by hydrogen bonds cannot exhibit rupture forces larger than approximately 200 pN in the asymptotic limit. This result explains earlier experimental and computational observations that indicate an asymptotical strength limit at vanishing pulling rates.

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Year:  2008        PMID: 18518493     DOI: 10.1103/PhysRevLett.100.198301

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  13 in total

1.  Nanostructure and molecular mechanics of spider dragline silk protein assemblies.

Authors:  Sinan Keten; Markus J Buehler
Journal:  J R Soc Interface       Date:  2010-06-02       Impact factor: 4.118

2.  Structure and mechanism of maximum stability of isolated alpha-helical protein domains at a critical length scale.

Authors:  Zhao Qin; Andrea Fabre; Markus J Buehler
Journal:  Eur Phys J E Soft Matter       Date:  2013-05-29       Impact factor: 1.890

3.  Bond energy effects on strength, cooperativity and robustness of molecular structures.

Authors:  Chia-Ching Chou; Markus J Buehler
Journal:  Interface Focus       Date:  2011-07-27       Impact factor: 3.906

4.  Structural rigidity of paranemic crossover and juxtapose DNA nanostructures.

Authors:  Mogurampelly Santosh; Prabal K Maiti
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

5.  Nanoconfinement controls stiffness, strength and mechanical toughness of beta-sheet crystals in silk.

Authors:  Sinan Keten; Zhiping Xu; Britni Ihle; Markus J Buehler
Journal:  Nat Mater       Date:  2010-03-14       Impact factor: 43.841

6.  ColGen: An end-to-end deep learning model to predict thermal stability of de novo collagen sequences.

Authors:  Chi-Hua Yu; Eesha Khare; Om Prakash Narayan; Rachael Parker; David L Kaplan; Markus J Buehler
Journal:  J Mech Behav Biomed Mater       Date:  2021-10-31

7.  What's inside the box? - Length-scales that govern fracture processes of polymer fibers.

Authors:  Tristan Giesa; Nicola M Pugno; Joyce Y Wong; David L Kaplan; Markus J Buehler
Journal:  Adv Mater       Date:  2013-11-11       Impact factor: 30.849

8.  High Tensile Strength of Engineered β-Solenoid Fibrils via Sonication and Pulling.

Authors:  Zeyu Peng; Amanda S Parker; Maria D R Peralta; Krishnakumar M Ravikumar; Daniel L Cox; Michael D Toney
Journal:  Biophys J       Date:  2017-11-07       Impact factor: 4.033

9.  Strength of hydrogen bond network takes crucial roles in the dissociation process of inhibitors from the HIV-1 protease binding pocket.

Authors:  Dechang Li; Baohua Ji; Keh-Chih Hwang; Yonggang Huang
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

10.  Hierarchical structure controls nanomechanical properties of vimentin intermediate filaments.

Authors:  Zhao Qin; Laurent Kreplak; Markus J Buehler
Journal:  PLoS One       Date:  2009-10-06       Impact factor: 3.240

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