| Literature DB >> 18517326 |
Riccardo Chelli1, Simone Marsili, Piero Procacci.
Abstract
We present an approach to the estimate of the potential of mean force along a generic reaction coordinate based on maximum likelihood methods and path-ensemble averages in systems driven far from equilibrium. Following similar arguments, various free energy estimators can be recovered, all providing comparable computational accuracy. The method, applied to the unfolding process of the alpha -helix form of an alanine decapeptide, gives results in good agreement with thermodynamic integration.Entities:
Year: 2008 PMID: 18517326 DOI: 10.1103/PhysRevE.77.031104
Source DB: PubMed Journal: Phys Rev E Stat Nonlin Soft Matter Phys ISSN: 1539-3755