Literature DB >> 18515401

Intrinsic curvature properties of photosynthetic proteins in chromatophores.

Danielle E Chandler1, Jen Hsin, Christopher B Harrison, James Gumbart, Klaus Schulten.   

Abstract

In purple bacteria, photosynthesis is carried out on large indentations of the bacterial plasma membrane termed chromatophores. Acting as primitive organelles, chromatophores are densely packed with the membrane proteins necessary for photosynthesis, including light harvesting complexes LH1 and LH2, reaction center (RC), and cytochrome bc(1). The shape of chromatophores is primarily dependent on species, and is typically spherical or flat. How these shapes arise from the protein-protein and protein-membrane interactions is still unknown. Now, using molecular dynamics simulations, we have observed the dynamic curvature of membranes caused by proteins in the chromatophore. A membrane-embedded array of LH2s was found to relax to a curved state, both for LH2 from Rps. acidophila and a homology-modeled LH2 from Rb. sphaeroides. A modeled LH1-RC-PufX dimer was found to develop a bend at the dimerizing interface resulting in a curved shape as well. In contrast, the bc(1) complex, which has not been imaged yet in native chromatophores, did not induce a preferred membrane curvature in simulation. Based on these results, a model for how the different photosynthetic proteins influence chromatophore shape is presented.

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Year:  2008        PMID: 18515401      PMCID: PMC2527265          DOI: 10.1529/biophysj.108.132852

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  67 in total

1.  The solution structure of Rhodobacter sphaeroides LH1beta reveals two helical domains separated by a more flexible region: structural consequences for the LH1 complex.

Authors:  M J Conroy; W H Westerhuis; P S Parkes-Loach; P A Loach; C N Hunter; M P Williamson
Journal:  J Mol Biol       Date:  2000-04-21       Impact factor: 5.469

2.  ATP-synthase of Rhodobacter capsulatus: coupling of proton flow through F0 to reactions in F1 under the ATP synthesis and slip conditions.

Authors:  B A Feniouk; D A Cherepanov; W Junge; A Y Mulkidjanian
Journal:  FEBS Lett       Date:  1999-02-26       Impact factor: 4.124

Review 3.  Photosynthetic apparatus of purple bacteria.

Authors:  Xiche Hu; Thorsten Ritz; Ana Damjanović; Felix Autenrieth; Klaus Schulten
Journal:  Q Rev Biophys       Date:  2002-02       Impact factor: 5.318

4.  Molecular evidence for the early evolution of photosynthesis.

Authors:  J Xiong; W M Fischer; K Inoue; M Nakahara; C E Bauer
Journal:  Science       Date:  2000-09-08       Impact factor: 47.728

5.  Flexibility and size heterogeneity of the LH1 light harvesting complex revealed by atomic force microscopy: functional significance for bacterial photosynthesis.

Authors:  Svetlana Bahatyrova; Raoul N Frese; Kees O van der Werf; Cees Otto; C Neil Hunter; John D Olsen
Journal:  J Biol Chem       Date:  2004-03-01       Impact factor: 5.157

Review 6.  How proteins produce cellular membrane curvature.

Authors:  Joshua Zimmerberg; Michael M Kozlov
Journal:  Nat Rev Mol Cell Biol       Date:  2006-01       Impact factor: 94.444

7.  Surface-modulated motion switch: capture and release of iron-sulfur protein in the cytochrome bc1 complex.

Authors:  Lothar Esser; Xing Gong; Shaoqing Yang; Linda Yu; Chang-An Yu; Di Xia
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-21       Impact factor: 11.205

8.  Inhibitor-complexed structures of the cytochrome bc1 from the photosynthetic bacterium Rhodobacter sphaeroides.

Authors:  Lothar Esser; Maria Elberry; Fei Zhou; Chang-An Yu; Linda Yu; Di Xia
Journal:  J Biol Chem       Date:  2007-11-26       Impact factor: 5.157

9.  Curvature and hydrophobic forces drive oligomerization and modulate activity of rhodopsin in membranes.

Authors:  Ana Vitória Botelho; Thomas Huber; Thomas P Sakmar; Michael F Brown
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

10.  OBSERVATIONS ON THE STRUCTURE OF RHODOSPIRILLUM MOLISCHIANUM.

Authors:  D D HICKMAN; A W FRENKEL
Journal:  J Cell Biol       Date:  1965-05       Impact factor: 10.539

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  27 in total

Review 1.  Cell biology of prokaryotic organelles.

Authors:  Dorothee Murat; Meghan Byrne; Arash Komeili
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-08-25       Impact factor: 10.005

2.  Molecular dynamics and brownian dynamics investigation of ion permeation and anesthetic halothane effects on a proton-gated ion channel.

Authors:  Mary Hongying Cheng; Rob D Coalson; Pei Tang
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

3.  Protein-induced membrane curvature investigated through molecular dynamics flexible fitting.

Authors:  Jen Hsin; James Gumbart; Leonardo G Trabuco; Elizabeth Villa; Pu Qian; C Neil Hunter; Klaus Schulten
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

4.  Four-scale description of membrane sculpting by BAR domains.

Authors:  Anton Arkhipov; Ying Yin; Klaus Schulten
Journal:  Biophys J       Date:  2008-05-30       Impact factor: 4.033

5.  Membrane-bending mechanism of amphiphysin N-BAR domains.

Authors:  Anton Arkhipov; Ying Yin; Klaus Schulten
Journal:  Biophys J       Date:  2009-11-18       Impact factor: 4.033

6.  Large-Scale Molecular Dynamics Simulations of Cellular Compartments.

Authors:  Eric Wilson; John Vant; Jacob Layton; Ryan Boyd; Hyungro Lee; Matteo Turilli; Benjamín Hernández; Sean Wilkinson; Shantenu Jha; Chitrak Gupta; Daipayan Sarkar; Abhishek Singharoy
Journal:  Methods Mol Biol       Date:  2021

7.  Light harvesting by lamellar chromatophores in Rhodospirillum photometricum.

Authors:  Danielle E Chandler; Johan Strümpfer; Melih Sener; Simon Scheuring; Klaus Schulten
Journal:  Biophys J       Date:  2014-06-03       Impact factor: 4.033

8.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

9.  Recent Developments and Applications of the CHARMM force fields.

Authors:  Xiao Zhu; Pedro E M Lopes; Alexander D Mackerell
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2011-06-28

10.  Membrane curvature induced by aggregates of LH2s and monomeric LH1s.

Authors:  Danielle E Chandler; James Gumbart; John D Stack; Christophe Chipot; Klaus Schulten
Journal:  Biophys J       Date:  2009-12-02       Impact factor: 4.033

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