Literature DB >> 18511425

The impact of founder events on chromosomal variability in multiply mating species.

John E Pool1, Rasmus Nielsen.   

Abstract

In species with heterogametic males, the relative levels of X chromosome versus autosome diversity hold key information about the evolutionary forces at work in a population. It has been shown that population size changes alter the ratio of X linked to autosomal (X/A) variation, with population size reductions and recent bottlenecks leading to decreased X/A diversity ratios. Here we use theory and simulation to investigate a separate demographic effect-that of founder events involving multiply mated females-and find that it leads to much stronger reductions in X/A diversity ratios than are produced by simple population size changes. Investigating the potential of this process to account for sharply reduced X-linked diversity in European Drosophila melanogaster, we find that this model yields predictions that are compatible with the empirical data.

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Year:  2008        PMID: 18511425      PMCID: PMC2734130          DOI: 10.1093/molbev/msn124

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  40 in total

1.  Haldane's sieve and adaptation from the standing genetic variation.

Authors:  H A Orr; A J Betancourt
Journal:  Genetics       Date:  2001-02       Impact factor: 4.562

2.  A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation.

Authors:  J C Fay; C I Wu
Journal:  Mol Biol Evol       Date:  1999-07       Impact factor: 16.240

3.  Chromosomal inversion polymorphism in Afrotropical populations of Drosophila melanogaster.

Authors:  Sylvie Aulard; Jean R David; Françoise Lemeunier
Journal:  Genet Res       Date:  2002-02       Impact factor: 1.588

4.  The effect of life-history and mode of inheritance on neutral genetic variability.

Authors:  B Charlesworth
Journal:  Genet Res       Date:  2001-04       Impact factor: 1.588

Review 5.  Male-driven evolution.

Authors:  Wen Hsiung Li; Soojin Yi; Kateryna Makova
Journal:  Curr Opin Genet Dev       Date:  2002-12       Impact factor: 5.578

6.  Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans.

Authors:  P Andolfatto
Journal:  Mol Biol Evol       Date:  2001-03       Impact factor: 16.240

7.  Genetic differentiation between American and European Drosophila melanogaster populations could be attributed to admixture of African alleles.

Authors:  G Caracristi; C Schlötterer
Journal:  Mol Biol Evol       Date:  2003-04-02       Impact factor: 16.240

8.  Strong founder effect in Drosophila pseudoobscura colonizing New Zealand from North America.

Authors:  J Reiland; S Hodge; M A F Noor
Journal:  J Hered       Date:  2002 Nov-Dec       Impact factor: 2.645

9.  Testing models of selection and demography in Drosophila simulans.

Authors:  Jeffrey D Wall; Peter Andolfatto; Molly Przeworski
Journal:  Genetics       Date:  2002-09       Impact factor: 4.562

10.  A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster.

Authors:  M O Kauer; D Dieringer; C Schlötterer
Journal:  Genetics       Date:  2003-11       Impact factor: 4.562

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  24 in total

1.  Can a sex-biased human demography account for the reduced effective population size of chromosome X in non-Africans?

Authors:  Alon Keinan; David Reich
Journal:  Mol Biol Evol       Date:  2010-05-07       Impact factor: 16.240

2.  Genomic variation in natural populations of Drosophila melanogaster.

Authors:  Charles H Langley; Kristian Stevens; Charis Cardeno; Yuh Chwen G Lee; Daniel R Schrider; John E Pool; Sasha A Langley; Charlyn Suarez; Russell B Corbett-Detig; Bryan Kolaczkowski; Shu Fang; Phillip M Nista; Alisha K Holloway; Andrew D Kern; Colin N Dewey; Yun S Song; Matthew W Hahn; David J Begun
Journal:  Genetics       Date:  2012-06-05       Impact factor: 4.562

3.  Finding the factors of reduced genetic diversity on X chromosomes of Macaca fascicularis: male-driven evolution, demography, and natural selection.

Authors:  Naoki Osada; Shigeki Nakagome; Shuhei Mano; Yosuke Kameoka; Ichiro Takahashi; Keiji Terao
Journal:  Genetics       Date:  2013-09-11       Impact factor: 4.562

4.  Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster.

Authors:  Beatriz Vicoso; Brian Charlesworth
Journal:  Genetics       Date:  2009-02-02       Impact factor: 4.562

Review 5.  Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation.

Authors:  Brian Charlesworth
Journal:  Nat Rev Genet       Date:  2009-03       Impact factor: 53.242

Review 6.  Population genetic inference from genomic sequence variation.

Authors:  John E Pool; Ines Hellmann; Jeffrey D Jensen; Rasmus Nielsen
Journal:  Genome Res       Date:  2010-01-12       Impact factor: 9.043

7.  Molecular Mechanisms and Evolutionary Processes Contributing to Accelerated Divergence of Gene Expression on the Drosophila X Chromosome.

Authors:  Joseph D Coolon; Kraig R Stevenson; C Joel McManus; Bing Yang; Brenton R Graveley; Patricia J Wittkopp
Journal:  Mol Biol Evol       Date:  2015-06-02       Impact factor: 16.240

8.  The role of background selection in shaping patterns of molecular evolution and variation: evidence from variability on the Drosophila X chromosome.

Authors:  Brian Charlesworth
Journal:  Genetics       Date:  2012-02-29       Impact factor: 4.562

9.  Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster.

Authors:  Timothy B Sackton; Rob J Kulathinal; Casey M Bergman; Aaron R Quinlan; Erik B Dopman; Mauricio Carneiro; Gabor T Marth; Daniel L Hartl; Andrew G Clark
Journal:  Genome Biol Evol       Date:  2009-11-18       Impact factor: 3.416

10.  Locus-specific decoupling of base composition evolution at synonymous sites and introns along the Drosophila melanogaster and Drosophila sechellia lineages.

Authors:  Vanessa L Bauer DuMont; Nadia D Singh; Mark H Wright; Charles F Aquadro
Journal:  Genome Biol Evol       Date:  2009-05-25       Impact factor: 3.416

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