Literature DB >> 18508441

From protein-disease associations to disease informatics.

Mehmet M Dalkilic1, James C Costello, Wyatt T Clark, Predrag Radivojac.   

Abstract

Advancements in high-throughput technology and computational power have brought about significant progress in our understanding of cellular processes, including an increased appreciation of the intricacies of disease. The computational biology community has made strides in characterizing human disease and implementing algorithms that will be used in translational medicine. Despite this progress, most of the identified biomarkers and proposed methodologies have still not achieved the sensitivity and specificity to be effectively used, for example, in population screening against various diseases. Here we review the current progress in computational methodology developed to exploit major high-throughput experimental platforms towards improved understanding of disease, and argue that an integrated model for biomarker discovery, predictive medicine and treatment is likely to be data-driven and personalized. In such an approach, major data collection is yet to be done and comprehensive computational models are yet to be developed.

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Year:  2008        PMID: 18508441     DOI: 10.2741/2934

Source DB:  PubMed          Journal:  Front Biosci        ISSN: 1093-4715


  7 in total

1.  Loss of post-translational modification sites in disease.

Authors:  Shuyan Li; Lilia M Iakoucheva; Sean D Mooney; Predrag Radivojac
Journal:  Pac Symp Biocomput       Date:  2010

2.  Graphlet kernels for prediction of functional residues in protein structures.

Authors:  Vladimir Vacic; Lilia M Iakoucheva; Stefano Lonardi; Predrag Radivojac
Journal:  J Comput Biol       Date:  2010-01       Impact factor: 1.479

Review 3.  Protein function in precision medicine: deep understanding with machine learning.

Authors:  Burkhard Rost; Predrag Radivojac; Yana Bromberg
Journal:  FEBS Lett       Date:  2016-08-06       Impact factor: 4.124

4.  Analysis of AML Genes in Dysregulated Molecular Networks.

Authors:  Eunjung Lee; Hyunchul Jung; Predrag Radivojac; Jong-Won Kim; Doheon Lee
Journal:  Summit Transl Bioinform       Date:  2009-03-01

5.  Analysis of AML genes in dysregulated molecular networks.

Authors:  Eunjung Lee; Hyunchul Jung; Predrag Radivojac; Jong-Won Kim; Doheon Lee
Journal:  BMC Bioinformatics       Date:  2009-09-17       Impact factor: 3.169

6.  Approximate subgraph matching-based literature mining for biomedical events and relations.

Authors:  Haibin Liu; Lawrence Hunter; Vlado Kešelj; Karin Verspoor
Journal:  PLoS One       Date:  2013-04-17       Impact factor: 3.240

7.  When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants.

Authors:  Kymberleigh A Pagel; Vikas Pejaver; Guan Ning Lin; Hyun-Jun Nam; Matthew Mort; David N Cooper; Jonathan Sebat; Lilia M Iakoucheva; Sean D Mooney; Predrag Radivojac
Journal:  Bioinformatics       Date:  2017-07-15       Impact factor: 6.937

  7 in total

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