| Literature DB >> 18507902 |
Cees van den Wijngaard1, Liselotte van Asten, Wilfrid van Pelt, Nico J D Nagelkerke, Robert Verheij, Albert J de Neeling, Arnold Dekkers, Marianne A B van der Sande, Hans van Vliet, Marion P G Koopmans.
Abstract
Syndromic surveillance is increasingly used to signal unusual illness events. To validate data-source selection, we retrospectively investigated the extent to which 6 respiratory syndromes (based on different medical registries) reflected respiratory pathogen activity. These syndromes showed higher levels in winter, which corresponded with higher laboratory counts of Streptococcus pneumoniae, respiratory syncytial virus, and influenza virus. Multiple linear regression models indicated that most syndrome variations (up to 86%) can be explained by counts of respiratory pathogens. Absenteeism and pharmacy syndromes might reflect nonrespiratory conditions as well. We also observed systematic syndrome elevations in the fall, which were unexplained by pathogen counts but likely reflected rhinovirus activity. Earliest syndrome elevations were observed in absenteeism data, followed by hospital data (+1 week), pharmacy/general practitioner consultations (+2 weeks), and deaths/laboratory submissions (test requests) (+3 weeks). We conclude that these syndromes can be used for respiratory syndromic surveillance, since they reflect patterns in respiratory pathogen activity.Entities:
Mesh:
Year: 2008 PMID: 18507902 PMCID: PMC2600280 DOI: 10.3201/eid1406.071467
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Registries from which syndrome data were obtained, the Netherlands, 1999–2004*
| Data type | Period | % Coverage† | Respiratory syndrome definitions‡ | Analyzed data | International code system | Registry |
|---|---|---|---|---|---|---|
| Absenteeism | 2002–2003 | 80§ | Reported sick employees; no further medical information | Sick leave reports of employees | – | Statistics Netherlands (CBS),
|
| General practice consultations | 2001–2004 | 1–2 | Symptoms and diagnoses indicating respiratory infectious disease | Symptoms and diagnoses recorded in practice or telephone consultations and in home visits | ICPC | Netherlands Information Network of General Practice (LINH),
|
| Pharmacy dispensations | 2001–2003 | 85 | Prescribed medications indicative for respiratory infectious disease | Prescription medications dispensed in Dutch pharmacies, coded according to the WHO ATC classification | ATC | Foundation for Pharmaceutical Statistics, |
| Hospitalization | 1999–2004 | 99 | General respiratory symptoms/diagnoses; specific respiratory biologic agent diagnoses | Discharge and secondary diagnoses, date of hospitalization | ICD-9-CM | Dutch National Medical Register (LMR) |
| Laboratory submissions¶ | 2001–2004 (1999–2000 excluded due to unstable coverage) | 16 | All submissions for microbiologic diagnostic tests on respiratory materials; all submissions for serologic testing on known specific respiratory pathogens; all submissions for | Laboratory submission requests for diagnostic testing | – | National Infectious Diseases Information System (ISIS) ( |
| Mortality | 1999–2004 | 100 | General respiratory symptoms/diagnoses; specific respiratory biologic agent diagnoses | Date of death, primary cause of death, complicating factors, other additional causes of death | ICD-10 | CBS |
*ICPC, International Classification of Primary Care; WHO, World Health Organization; ATC, Anatomic Therapeutic Chemical Classification System; ICD-9-CM, International Classification of Diseases, 9th revision, Clinical Modification; ICD-10, International Classification of Diseases, 10th revision. †Percentage of total population, 16.3 million. ‡For detailed syndrome definitions and codes, see Technical Appendix. §Percentage of working population, 8 million. ¶Diagnostic test requests with both negative and positive results.
Figure 1Respiratory syndrome time series and laboratory pathogen counts in the Netherlands. Respiratory syndromes were defined for the 6 registries defined in Table 1: A) absenteeism, B) general practice (GP) consultations, C) pharmacy, D) laboratory submissions, E) hospitalizations, and F) mortality counts. Pathogens plotted were respiratory syncytial virus (RSV), influenza A, influenza B, and Streptococcus pneumoniae [1999–2004 or part of this period, panels A–C]. Recurrent unexplained syndrome elevations in October are circled. Pathogen counts are daily counts of pathogens found in laboratory survellience.
Pearson correlation coefficients between time series of syndromes and laboratory pathogen counts, the Netherlands, 1999–2004*†
| Pathogen | Hospital | GP | Mortality | Pharmacy | Laboratory submissions | Absenteeism |
|---|---|---|---|---|---|---|
| RSV |
|
| 0.41 |
|
| 0.47 |
| Influenza A |
|
|
|
| 0.47 | 0.35 |
| Influenza B | 0.31 | 0.39 |
| 0.42 | 0.34 | 0.33 |
|
|
|
|
|
|
|
|
| Rhinovirus | 0.33 | 0.34 | 0.33 | 0.33 | NS | 0.35 |
| Parainfluenza | 0.20 | NS | NS | NS | 0.25 | NS |
| Adenovirus | 0.37 | 0.35 | 0.33 | 0.36 | NS | 0.34 |
| Enterovirus | −0.65 | −0.66 | −0.59 | −0.61 | −0.57 | −0.51 |
|
| 0.13 | 0.27 | 0.25 | 0.39 | 0.32 | 0.26 |
|
| NS | NS | NS | NS | NS | NS |
*GP, general practice; RSV, respiratory syncytial virus; NS, nonsignificant. Correlations >0.50 in boldface; p>0.05. †Unlagged.
Pearson correlation coefficients between time series in respiratory pathogen counts, the Netherlands, 1999–2004*†
| Pathogen |
| RSV | Influenza A | Influenza B | RV | PIV | Adenovirus | Enterovirus |
|
|
|---|---|---|---|---|---|---|---|---|---|---|
|
| 1.00 | 0.35 |
| 0.36 | NS | 0.32 | 0.32 | –0.44 | 0.21 | −0.31 |
| RSV | 1.00 | 0.23 | NS | 0.30 | 0.13 | 0.21 | –0.30 | 0.19 | NS | |
| Influenza A | 1.00 | 0.36 | NS | 0.12 | 0.24 | –0.39 | 0.16 | −0.25 | ||
| Influenza B | 1.00 | NS | NS | NS | –0.30 | 0.25 | −0.21 | |||
| RV | 1.00 | NS | 0.21 | NS | NS | Ns | ||||
| PIV | 1.00 | NS | –0.19 | NS | NS | |||||
| Adenovirus | 1.00 | –0.21 | NS | −0.14 | ||||||
| Enterovirus | 1.00 | −0.15 | 0.21 | |||||||
|
| 1.00 | NS | ||||||||
|
| 1.00 |
*S. pneumoniae, Streptococcus pneumoniae; RSV, respiratory syncytial virus; RV, rhinovirus; PIV, parainfluenza virus; NS, nonsignificant. Correlations >0.50 in boldface; p value >0.05. †Unlagged.
All respiratory pathogen counts included as explanatory variables in the regression models, the Netherlands, 1999–2004*†
| Syndrome data | RSV | Influenza A | Influenza B | RV | PIV | Adenovirus | Enterovirus |
|
| |
|---|---|---|---|---|---|---|---|---|---|---|
| Absenteeism | 2 | 5 | 4 | 2 | 4 | 5 | – | – | – | |
| GP | –1 | 1 | 2 | –1 | 1 | 2 | −2 | – | –3 | |
| Pharmacy | –1 | 0 | 2 | 0 | 2 | 5 | −2 | – | 5 | −3 |
| Hospitalization | 0 | 2 | 1 | – | –2 | 3 | – | – | – | |
| Laboratory submissions | –2 | 0 | 1 | –3 | – | 2 | – | 5 | | |
| Mortality | −3 | 1 | 0 | – | – | – | – | – | – | |
*S. pneumoniae, Streptococcus pneumoniae; RSV, respiratory syncytial virus; RV, rhinovirus; PIV, parainfluenza virus; GP, general practice; –, pathogen not included in model. †The lag time (in weeks) is indicated, that showed optimal fit between syndrome time-series and lagged pathogen counts included in the linear regression model; e.g., according to the model, the trend in hospitalizations precedes the influenza A laboratory counts by 2 weeks.
Syndrome variation that can be explained by either the pathogen counts, seasonal terms, or pathogen counts and seasonal terms together*
| Syndrome data | Pathogens, % | Pathogens and seasonal terms, % | Seasonal terms, % |
|---|---|---|---|
| Absenteeism | 68 | 80 | 79 |
| GP | 86 | 89 | 75 |
| Pharmacy | 80 | 87 | 77 |
| Hospitalization | 84 | 88 | 75 |
| Laboratory submissions | 61 | 63 | 53 |
| Mortality | 78 | 78 | 52 |
*Estimated by 3 different R2 values for each registry: 1) for the syndromes explained by pathogen counts alone; 2) after adding seasonal terms to the pathogen model; and 3) for the syndromes explained by seasonal terms alone (sine and cosine parameters). GP, general practice.
Standardized parameter estimates (βs) for all respiratory pathogen counts included as explanatory variables in the regression models: before and after adding seasonal terms to the models*†
| Syndrome data | RSV | Influenza A | Influenza B | RV | PIV | Adenovirus | Enterovirus |
|
| |
|---|---|---|---|---|---|---|---|---|---|---|
| Absenteeism | 0.31/ (NS) | 0.27/ (NS) | 0.33/ (NS) | 0.28/ 0.12 | 0.19/ (NS) | 0.20/ (NS) | – | _ | _ | _ |
| GP | 0.60/ 0.51 | 0.32/ 0.32 | 0.20/ 0.16 | 0.13/ 0.10 | 0.07/ (NS) | 0.14/ 0.08 | 0.07/ (NS) | _ | 0.06/ 0.05 | _ |
| Pharmacy | 0.51/ 0.54 | 0.27/ 0.22 | 0.24/ (NS) | 0.25/ 0.11 | 0.16/ 0.08 | 0.16/ (NS) | 0.08/ (NS) | _ | 0.12/ (NS) | 0.11/ 0.11 |
| Hospitalization | 0.60/ 0.44 | 0.36/ 0.34 | 0.21/ 0.12 | _ | 0.13/ 0.05 | 0.09/ (NS) | _ | _ | _ | _ |
| Laboratory submissions | 0.49/ 0.47 | 0.19/ 0.20 | 0.22/ 0.18 | 0.28/ 0.22 | _ | 0.17/ 0.08 | _ | _ | 0.10/ 0.10 | _ |
| Mortality | 0.40/ 0.36 | 0.52/ 0.51 | 0.24/ 0.24 | _ | _ | _ | _ | _ | _ | _ |
*S. pneumoniae, Streptococcus pneumoniae; RSV, respiratory syncytial virus; RV, rhinovirus; PIV, parainfluenza virus; GP, general practice; –, pathogen not included in model; NS, the pathogen variable is no longer significant after seasonal terms are added. †For example, 0.60/0.40 for RSV indicates a standardized β of 0.60 for RSV in the model with only pathogen variables and a β of 0.40 in the same model after adding seasonal terms.
Figure 2The (maximum) R2 by the lagged syndromes with the hospital syndrome as a reference. Aggregated by week, univariate Pearson correlation coefficients were calculated of the hospital syndrome and each of the other syndromes. Note that the Pearson correlation coefficients are calculated over different periods for the different registries because not all registries cover the same period (Table 1). Measured by the syndrome lag with the maximized R2, the timeliness differed between the registries in the following order: absenteeism, hospital, pharmacy/general practice (GP), mortality/laboratory submissions (as projected on the x-axis).