Literature DB >> 18501663

Small RNA metabolism in Arabidopsis.

Vanitharani Ramachandran1, Xuemei Chen.   

Abstract

The Arabidopsis genome encodes two major classes of 20-24-nucleotide riboregulators: microRNAs and small interfering RNAs. These small RNAs act as sequence-specific repressors of target gene expression, either at the transcriptional level through DNA and/or histone methylation or at the post-transcriptional level through transcript cleavage or translational inhibition. Small RNAs are processed from precursor RNAs by one or more of the four DICER-LIKE RNase III enzymes, modified by HUA ENHANCER 1, a small RNA methyltransferase, and loaded onto an argonaute protein-containing RNA-induced silencing complex. Here, we review the biogenesis of small RNAs, and we discuss the major outstanding questions in small RNA metabolism and function.

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Year:  2008        PMID: 18501663      PMCID: PMC2569976          DOI: 10.1016/j.tplants.2008.03.008

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  76 in total

1.  MicroRNAs and other tiny endogenous RNAs in C. elegans.

Authors:  Victor Ambros; Rosalind C Lee; Ann Lavanway; Peter T Williams; David Jewell
Journal:  Curr Biol       Date:  2003-05-13       Impact factor: 10.834

Review 2.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

3.  miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii.

Authors:  Attila Molnár; Frank Schwach; David J Studholme; Eva C Thuenemann; David C Baulcombe
Journal:  Nature       Date:  2007-05-30       Impact factor: 49.962

4.  Common functions for diverse small RNAs of land plants.

Authors:  Michael J Axtell; Jo Ann Snyder; David P Bartel
Journal:  Plant Cell       Date:  2007-06-29       Impact factor: 11.277

Review 5.  Argonaute proteins: mediators of RNA silencing.

Authors:  Lasse Peters; Gunter Meister
Journal:  Mol Cell       Date:  2007-06-08       Impact factor: 17.970

6.  An expression atlas of rice mRNAs and small RNAs.

Authors:  Kan Nobuta; R C Venu; Cheng Lu; André Beló; Kalyan Vemaraju; Karthik Kulkarni; Wenzhong Wang; Manoj Pillay; Pamela J Green; Guo-liang Wang; Blake C Meyers
Journal:  Nat Biotechnol       Date:  2007-03-11       Impact factor: 54.908

7.  A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii.

Authors:  Tao Zhao; Guanglin Li; Shijun Mi; Shan Li; Gregory J Hannon; Xiu-Jie Wang; Yijun Qi
Journal:  Genes Dev       Date:  2007-04-30       Impact factor: 11.361

8.  Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants.

Authors:  Yuda Fang; David L Spector
Journal:  Curr Biol       Date:  2007-04-19       Impact factor: 10.834

9.  Pimet, the Drosophila homolog of HEN1, mediates 2'-O-methylation of Piwi- interacting RNAs at their 3' ends.

Authors:  Kuniaki Saito; Yuriko Sakaguchi; Takeo Suzuki; Tsutomu Suzuki; Haruhiko Siomi; Mikiko C Siomi
Journal:  Genes Dev       Date:  2007-07-01       Impact factor: 11.361

10.  The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC.

Authors:  Michael D Horwich; Chengjian Li; Christian Matranga; Vasily Vagin; Gwen Farley; Peng Wang; Phillip D Zamore
Journal:  Curr Biol       Date:  2007-06-28       Impact factor: 10.834

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  65 in total

Review 1.  Cell-to-cell trafficking of RNA and RNA silencing through plasmodesmata.

Authors:  Tae Kyung Hyun; Mohammad Nazim Uddin; Yeonggil Rim; Jae-Yean Kim
Journal:  Protoplasma       Date:  2010-11-02       Impact factor: 3.356

2.  A characterization of grapevine of GRAS domain transcription factor gene family.

Authors:  Xin Sun; Zhengqiang Xie; Cheng Zhang; Qian Mu; Weimin Wu; Baoju Wang; Jinggui Fang
Journal:  Funct Integr Genomics       Date:  2016-02-03       Impact factor: 3.410

3.  Regulation of Parent-of-Origin Allelic Expression in the Endosperm.

Authors:  Karina S Hornslien; Jason R Miller; Paul E Grini
Journal:  Plant Physiol       Date:  2019-05-07       Impact factor: 8.340

Review 4.  Functional analysis of transcription factors in Arabidopsis.

Authors:  Nobutaka Mitsuda; Masaru Ohme-Takagi
Journal:  Plant Cell Physiol       Date:  2009-05-28       Impact factor: 4.927

5.  Identification of a plant-specific Zn2+-sensitive ribonuclease activity.

Authors:  Denghui Xing; Shuisong Ni; Michael A Kennedy; Qingshun Quinn Li
Journal:  Planta       Date:  2009-07-28       Impact factor: 4.116

6.  Clusters and superclusters of phased small RNAs in the developing inflorescence of rice.

Authors:  Cameron Johnson; Anna Kasprzewska; Kristin Tennessen; John Fernandes; Guo-Ling Nan; Virginia Walbot; Venkatesan Sundaresan; Vicki Vance; Lewis H Bowman
Journal:  Genome Res       Date:  2009-07-07       Impact factor: 9.043

7.  RNA-dependent RNA polymerase 6 delays accumulation and precludes meristem invasion of a viroid that replicates in the nucleus.

Authors:  Francesco Di Serio; Angel-Emilio Martínez de Alba; Beatriz Navarro; Andreas Gisel; Ricardo Flores
Journal:  J Virol       Date:  2009-12-16       Impact factor: 5.103

8.  A significant fraction of 21-nucleotide small RNA originates from phased degradation of resistance genes in several perennial species.

Authors:  Thomas Källman; Jun Chen; Niclas Gyllenstrand; Ulf Lagercrantz
Journal:  Plant Physiol       Date:  2013-04-11       Impact factor: 8.340

9.  Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response.

Authors:  Jingyu Zhang; Yunyuan Xu; Qing Huan; Kang Chong
Journal:  BMC Genomics       Date:  2009-09-23       Impact factor: 3.969

10.  Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins.

Authors:  Francisco Merchan; Adnane Boualem; Martin Crespi; Florian Frugier
Journal:  Genome Biol       Date:  2009-12-01       Impact factor: 13.583

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